Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20245
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373...    28   6.6  
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    28   6.6  
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538...    28   8.7  
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284...    28   8.7  

>07_03_0902 -
           22435692-22436156,22436684-22436923,22437228-22437349,
           22437441-22437587,22437753-22437882,22437981-22438116,
           22438223-22438428,22438644-22438844,22438999-22439157,
           22439781-22439858,22440453-22440542,22440625-22440777,
           22440873-22440991,22441190-22441328,22441422-22441525,
           22441944-22441989,22442087-22442252,22442356-22442383,
           22442460-22442610,22442686-22442829,22442912-22443013,
           22443566-22444093
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 194 DSVARAVRIHAFVLLARRIAHSLGTFRRSLRRS 292
           D++A+++  H F  +  +I HSLGT R    RS
Sbjct: 515 DALAKSIYAHLFDWVVEQINHSLGTGREHTWRS 547


>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 162 NHCTIRRDYRSTPWLAPSVFMHLFCSPAASRIRSVHFAG 278
           N+C  R D+   PW+   +   LF      +  SVHF G
Sbjct: 183 NNCVERFDHHC-PWVGQCIGQGLFGKARTPKFNSVHFVG 220


>06_03_1451 +
           30252366-30252373,30252621-30252867,30253441-30253893,
           30253971-30254555
          Length = 430

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 254 HSLGTFRRSLRRSPVRVAC*VHFYALVLVARRFAVRTARIFASANVPWPGCYAFIFYT 427
           H L +FR SLR  P+ +    +   L+L ++ FAV  A + ++A  P     A  F+T
Sbjct: 238 HWLASFRSSLR-PPLLIKRHNYAAGLILRSKNFAVSLAELISAAGKPNNSGEASRFFT 294


>02_01_0391 +
           2838471-2838794,2838892-2839028,2841155-2841631,
           2841719-2841999,2843009-2843051,2844094-2844148,
           2845771-2845824,2846282-2846314,2846574-2846621,
           2846885-2846950,2847286-2847426
          Length = 552

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +1

Query: 493 LWNGVAVPEICFQLHTTKIQEPYGLGVDKLIFTFKMRLLFYAFLVCYKYNFYFFQSCLNF 672
           +W G+ +     +      +E    G D + F + +R  FY  L  + Y+    + CL  
Sbjct: 348 IWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYVHLWIFAYSQLEVEECLYV 407

Query: 673 VIFN 684
           + F+
Sbjct: 408 LAFS 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,061
Number of Sequences: 37544
Number of extensions: 312650
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)