Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20245
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)         34   0.14 
SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)               29   3.9  
SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)             29   3.9  
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
          Length = 301

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = -3

Query: 351 KRLATKTSA*KCT*QATRTGDRRSDRRNVPSECAMRRASKTNA*IRTARATESSGS 184
           KRL+T +S  +   QA R   + S + ++ + C   +  +TNA  RTA AT SSG+
Sbjct: 229 KRLSTLSSDKETFDQAARHTRKHSTKVDITTRCTTNQTPQTNA--RTASATTSSGT 282


>SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 551 KNPMASELINLYLHLR*DFCFMHFLFATNTIFI 649
           KNP+A E+INL L    D   +HF  A   +++
Sbjct: 180 KNPLALEVINLVLQFSFDAMLVHFFGARFLVYL 212


>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
          Length = 473

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 523 CFQLHTTKIQEPYGLGVDKLIFTFKMRLLFYAFLVCYKYNFYFFQ 657
           C Q    K  EPYGL +D  +   K++   YA  +  K++  FF+
Sbjct: 126 CLQHGVIKPTEPYGLPLDFTLLPKKLKQAGYATHMVGKWHLGFFE 170


>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
 Frame = -2

Query: 433 STRIKNECITAWPRDIRRCEYSRGANGEASSD*NKRIEMYLTSHA--HRRPAKRPAKCTE 260
           ++  KN  I AWPR+      SR  N  ++   N   E   TS+   +R  + +P+    
Sbjct: 332 TSSFKNSTIKAWPRNTSLAASSRIVNDFSTESNNTNAEAMFTSNVNNYRSYSVKPSNSMR 391

Query: 259 RM-----RDAAGEQNKCMNTDGASHGVER*SRRIVQ 167
                  + AA   N+      +SH +   S +I Q
Sbjct: 392 SQHETLNKSAATNANQNCQRFNSSHRMSDGSNKIEQ 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,188
Number of Sequences: 59808
Number of extensions: 372545
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)