Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20245
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    28   5.9  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    28   5.9  
Z68336-5|CAA92740.3|  442|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +1

Query: 508 AVPEICFQLHTTKIQEPYGLGVDKLIFTFKMRLLFYAFLVCYKYNFYFFQSCLNFVIFNC 687
           AVP + + +     Q  +   +  L+  + + +L YA ++C+ + + FF     F+  NC
Sbjct: 35  AVPGLIYFMFKRLFQLYFHGNLKTLLIAYFISILLYAVMLCFAFGYQFFVPF--FIKSNC 92


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +1

Query: 505 VAVPEICFQLHTTKIQEPYGLGVDKLIFTFKMRLLFYAFLVCYKYNFYFFQSCLNFVIFN 684
           +A+P + F +     + P+   +  L+ ++ +    +A ++C+ + ++FF     FV  N
Sbjct: 34  LAMPSLIFFMVEKVFKLPFHGNLKFLLVSYFIGTFLFASIICFTFGYHFFVPF--FVTSN 91

Query: 685 C 687
           C
Sbjct: 92  C 92


>Z68336-5|CAA92740.3|  442|Caenorhabditis elegans Hypothetical
           protein F22B3.8 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 518 KFVSNYILQRFKNPMASELINLY 586
           K+ S YI +RFK P   ELIN Y
Sbjct: 104 KWTSFYIERRFKFPTIDELINYY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,797
Number of Sequences: 27780
Number of extensions: 281561
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)