Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20245
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3) ide...    29   3.2  
At2g27930.1 68415.m03385 zinc-binding family protein similar to ...    28   7.3  
At1g20150.1 68414.m02520 subtilase family protein similar to sub...    27   9.6  

>At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3)
           identical to pseudo-response regulator 3 GI:10281008
           from [Arabidopsis thaliana]
          Length = 495

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = -2

Query: 421 KNECITAWPRDIRRCEYSRGANGEASSD*NKRIEMYLTSHAHRRPAKRPAKCTERMRDAA 242
           KNE    W    RRC  S G+  E+     K ++   T     + ++  A  ++  R+ +
Sbjct: 172 KNELKNLWQHVWRRCHSSSGSGSESGIHDKKSVKPEST-----QGSENDASISDEHRNES 226

Query: 241 GEQNKCMNTDGAS 203
           G      N DG S
Sbjct: 227 GSSGGLSNQDGGS 239


>At2g27930.1 68415.m03385 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 135

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 135 SRRKQLNSFNHCTIRRDYRSTPWLAPSVFMHLF 233
           + R Q  + +H      + S PW+A  VF+HLF
Sbjct: 96  NERPQPKNSSHEPFLIPFASVPWVARFVFLHLF 128


>At1g20150.1 68414.m02520 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 780

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 416 IFYTCRISLIQNLLHIPYLH*NFIQFYGMVWQYPKFVSNYILQRFKNPMAS 568
           IF      LI    H+ YL  NF+ +YG      K +SN I Q F  P  S
Sbjct: 613 IFGPSSPGLIYETNHMDYL--NFLGYYGFTSDQIKKISNRIPQGFACPEQS 661


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,458
Number of Sequences: 28952
Number of extensions: 245823
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)