Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20244
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.92 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 606 LPEVMLGLLPGGGGTQRLPALTSIPTTLDLAL 701
           L E  +G + G GGT  +   TS+ T++ LA+
Sbjct: 282 LLEPAVGTMTGAGGTAIVSISTSVSTSVYLAI 313


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 649  VPPPPGKSPNMTSGSPNPVLESF 581
            VPPP G S   ++GS +P +  F
Sbjct: 1111 VPPPSGSSGPGSTGSKSPPVAGF 1133


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 640 PPGKSPNMTSGSPNPVLESFTAMRYL 563
           P G +PN +S SP P     +  ++L
Sbjct: 60  PSGNTPNKSSTSPYPPNHPLSGSKHL 85


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 213 LGLLERHTFGY 181
           LG++ RH FGY
Sbjct: 7   LGIMHRHCFGY 17


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 645 GTQRLPALTSIPTTLDLALTGKTV 716
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 645 GTQRLPALTSIPTTLDLALTGKTV 716
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 503 RICRNTRQLSRRWIRDC 553
           RIC + R ++ + I DC
Sbjct: 356 RICLDARMINSKMIADC 372


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 649 VPPPPGKSPNMTSGSPNPVL 590
           +PP PG SP+    S +P +
Sbjct: 230 IPPHPGLSPHPPHLSSHPAI 249


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 649 VPPPPGKSPNMTSGSPNPVL 590
           +PP PG SP+    S +P +
Sbjct: 122 IPPHPGLSPHPPHLSSHPAI 141


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 232 NLHFVCTWLAGTAYFRLCT 176
           +L F C ++  T +F LCT
Sbjct: 82  HLLFYCPFIIFTVHFLLCT 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,653
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)