Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20244
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 32 0.083
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.58
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 4.1
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 26 7.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 7.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.5
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 32.3 bits (70), Expect = 0.083
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +3
Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665
+T + V A + G +GGG A+ +RIA +D T F +PE +G +
Sbjct: 149 ATYQKPVVALMNGITMGGGSGLAMHVPFRIACED--TMFAMPETGIGYFTDVAASFFFSR 206
Query: 666 LTSIPTTLDLALTGKTVKADKAKKLGI 746
L T L LT + VK + GI
Sbjct: 207 LPGYFGTY-LGLTSQIVKGYDCLRTGI 232
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -2
Query: 772 SKRETNRSTIPNFFALSAFTVLPVRARSKVVGMEVRA--GNLCVPPPPGKSPNMTSGSPN 599
S+R + I N + S+ P RS G G PPPP +S T P
Sbjct: 318 SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Query: 598 PVLESFTAMRYLHARAVSNPP 536
P+ S RAVSNPP
Sbjct: 378 PLSSS---------RAVSNPP 389
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 458 KRGHEIFRRIDNHGNRICRNTRQLSRRWIRDCSCM*ISHCCERLQNRIWTTRSHVGTFAR 637
KR +EI+ I RNT + W SC I C +QNR + +S + ++
Sbjct: 457 KRAYEIYDEI--------RNTFSQDKAWNYLASCEEIQIICLLMQNRNISLKSQI-SYLN 507
Query: 638 RWRDTEITCSHLHTYNF 688
+W D + + ++F
Sbjct: 508 KWFDEMVYIYAVRLHSF 524
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = -2
Query: 568 YLHARAVSNPPPRQLPCIAAYTVSVIVDSSEYFMSSFRQTDNFFLCFAVFDHAYISPCNE 389
Y H R+ +P C + +I + +S++ NF +H I C E
Sbjct: 529 YHHRRSAKHP---SCNCFSHLQTKLIDSGPKPANNSYQHQSNFIGVVISTNHNIIKKCQE 585
Query: 388 ASRLA*YNDCSF 353
+ N+CSF
Sbjct: 586 SQIQTGKNNCSF 597
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 188 KVCRSSKPSTYKMQIGQWSLRSPLDSPNVKVNSLNTQVMEEVSNI 322
+V S KP Y Q Q+S + LD+P+ + +S + +E +S +
Sbjct: 243 QVAFSDKPGKYFNQPMQYSKQFKLDNPDYEASSDSLNDIENLSTL 287
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQ 527
P P G S + S P SF + +L + SN P ++
Sbjct: 140 PRPSGNSSRLDRNSSRPFTSSFHSAPFLSSYGSSNDPSQE 179
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 185 PKVCRSSKPSTYKMQIGQWSLRSPLDSPNVKVNSLN 292
P V + P+T I Q + +P+ S ++++NS N
Sbjct: 255 PLVAAPTSPNTSSTLITQSAAPTPIASTSIRINSFN 290
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 224 MQIGQWSLRSPLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAV 364
+ IGQ SL + L+ VK +++E++ +NE + +S +E V
Sbjct: 313 LDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELEIEV 359
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 655 LCVPPPPGKSPNMTSGSPNPVLESFTAMR 569
L P PP + P +T+ SPN ++ S +R
Sbjct: 240 LTPPAPPVELPPVTTTSPNAIIRSVQWIR 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,257
Number of Sequences: 5004
Number of extensions: 66025
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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