Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20244
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11) 126 2e-29
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02) 45 6e-05
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06) 43 3e-04
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77) 38 0.007
SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1) 28 7.6
SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46) 28 7.6
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 28 7.6
SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083) 28 7.6
>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
Length = 230
Score = 126 bits (304), Expect = 2e-29
Identities = 58/89 (65%), Positives = 69/89 (77%)
Frame = +3
Query: 504 VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPT 683
V AAI G+C+GGGLE AL+C YRIAV D KT PEVMLGLLPG GGTQRLP L +P
Sbjct: 6 VVAAIMGTCMGGGLELALSCHYRIAVNDGKTVLSAPEVMLGLLPGAGGTQRLPRLVGLPD 65
Query: 684 TLDLALTGKTVKADKAKKLGIVDLLVSLL 770
+LD+ LTGK ++A KAKK+G+VD+LV L
Sbjct: 66 SLDMMLTGKNIRAQKAKKMGLVDMLVQPL 94
>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 76.2 bits (179), Expect = 3e-14
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = +3
Query: 453 CLKEDM--KYSEESTITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLG 626
CL D ++ S T+ V AA+ G LGGG E A+ C I K FG PE+++G
Sbjct: 115 CLSGDFLGHWTRVSKCTKPVIAAVNGFALGGGCELAMMCD--IIYASDKAKFGQPEILIG 172
Query: 627 LLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIV 749
+PG GGTQRL +++ LTG + AD A K G+V
Sbjct: 173 TIPGAGGTQRLTRAVGKSLAMEMVLTGDPINADHALKAGLV 213
>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/88 (42%), Positives = 52/88 (59%)
Frame = +3
Query: 498 ETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSI 677
+ V AIQG +GGGLE AL C R+ +DS GF + L+ GG RLP L +
Sbjct: 121 QPVIGAIQGYAVGGGLELALLCDLRVCEEDSVFGFFNRRFGVPLVDGGA--VRLPYLIGL 178
Query: 678 PTTLDLALTGKTVKADKAKKLGIVDLLV 761
LDL +TG+ VKA +A ++G+V+ +V
Sbjct: 179 SRALDLIMTGRAVKAQEAIEIGLVNRVV 206
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 275 KVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADI 409
K N++N++ +++S E + + AV+ +GK G F AG+D+
Sbjct: 48 KRNAINSETADQLSETFRHFEIDDSVNVAVL-TGKGGNFCAGSDL 91
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 52.8 bits (121), Expect = 3e-07
Identities = 20/72 (27%), Positives = 46/72 (63%)
Frame = +2
Query: 278 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLS 457
+ + Q + + ++ EI N ++ +V++S KPGC+IAGADI+M++ + +V ++
Sbjct: 56 IYGIRQQPLLPLRKVMQEITHNPDVKCSVLMSAKPGCWIAGADINMLKAGENAAQVTEIA 115
Query: 458 KRGHEIFRRIDN 493
K G ++++ +++
Sbjct: 116 KGGQQVYQFLED 127
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 504 VYAAIQGSCLGGGLE 548
V AAI G+C+GGGLE
Sbjct: 132 VVAAIMGTCMGGGLE 146
>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
Length = 280
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +3
Query: 540 GLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVK 719
G+ ++ +YR+A + KT F +PE +G P GG LP L+ L LALTG+ +K
Sbjct: 122 GVGLSVHGRYRVATE--KTTFAMPETAIGFFPDVGGAHALPRLSG-KLGLFLALTGQRLK 178
Query: 720 ADKAKKLGIVDLLVSL 767
K GI V+L
Sbjct: 179 GYNVKLAGIATHYVTL 194
>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
Length = 149
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 468 MKYSEESTITET----VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLP 635
+ Y E T E V AA+ +C+GGG++ AC R+ D+ F + EV LGL
Sbjct: 26 LAYQESFTAIEKCEKPVIAAVHSACVGGGVDMICACDIRLCTSDA--WFQVKEVELGLAA 83
Query: 636 GGGGTQRLPAL 668
G QR+P +
Sbjct: 84 DVGTLQRMPKI 94
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 41.5 bits (93), Expect = 8e-04
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +3
Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGL--LPGGGGTQRLPALTSIPT 683
AAI+G + GG +LAC Y + D + GLPE+ LGL P GT L
Sbjct: 1518 AAIKGHAIAGGCVLSLACDYSVMASDFR--IGLPELSLGLYFAPWMAGT--LSNAVGRNR 1573
Query: 684 TLDLALTGKTVKADKAKKLGIVDLLVSLLDQVWVSLRK 797
+ + AD A +G++D V+ +D V RK
Sbjct: 1574 AEKIIYNAQVFDADDAAGIGLID-KVTHVDAVMTETRK 1610
>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +3
Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTL 689
AA+ G + GG A AC YR+ + G+ E ++G+ +Q + L T
Sbjct: 86 AAVNGHAVAGGCLLAAACDYRLMA--ANFTIGMNETIVGIAIPFWISQNIVNLVGTSTGE 143
Query: 690 DLALTGKTVKADKAKKLGIVDLLV 761
+ G + A++A+K+G+VD +V
Sbjct: 144 RICALGTMLSAEEAQKIGLVDHVV 167
Score = 35.1 bits (77), Expect = 0.066
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 278 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADI 409
VNS + + +EE+ + + ++E+N+ ++ S P F AG D+
Sbjct: 8 VNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAGLDL 51
>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
Length = 393
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 492 ITETVYAAIQGSCLGGGLETALACKYRIAVKDS 590
+T+ V AIQG +GGGLE AL C R+ +DS
Sbjct: 356 LTKPVIGAIQGYAVGGGLELALLCDLRVCEEDS 388
>SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 531 LGGGLETALACKY----RIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLA 698
L GL TA C+ +AV K+ F P V +GL G A+ +++
Sbjct: 88 LSTGLATAAGCQLVASCDVAVASDKSQFATPGVNIGLFCSTPGVALARAVPR-KVAMEML 146
Query: 699 LTGKTVKADKAKKLGIVDLLV 761
LTG+ + A +A + G+V +V
Sbjct: 147 LTGRPITAGEALRHGLVSRVV 167
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Frame = +3
Query: 510 AAIQGSCLGGGLET-------ALACKYRIAVKDSKTGFGLPEVM-----LGLLPGGGGTQ 653
AAIQG +GGG E + + + PE+ +GL PG GG
Sbjct: 975 AAIQGLAIGGGAEAHTQGGAGGVNAPPHTTAESPFSVLNRPEIKFVQARMGLTPGWGGGA 1034
Query: 654 RLPALTSIPTTLDLALTGKTVKADKAKKLGIVD 752
RL L +++ L K++K +++ G+VD
Sbjct: 1035 RLVQLVGRQKAMEILLQCKSMKLEESLMCGLVD 1067
>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 278 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 373
VNS N Q+MEE+ I+ ++E+N +I S
Sbjct: 70 VNSFNMQLMEEICLILEDLESNKDCRGLIITS 101
>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1892
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 420 KTAKQRKKLSVCLKEDMKYSEEST-ITETVYAAI 518
K + + KLS+C K D K +E T IT T+Y I
Sbjct: 159 KLKELQAKLSICAKRDQKNAESPTNITRTLYEVI 192
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 496 VIVDSSEYFMSSFRQT--DNFFLCFAVFDH 413
V++D ++ F++S+R DNFF +FDH
Sbjct: 295 VVMDMAKPFLNSYRHIFCDNFFTTVRLFDH 324
>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
Length = 567
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 496 VIVDSSEYFMSSFRQT--DNFFLCFAVFDH 413
V++D ++ F++S+R DNFF +FDH
Sbjct: 295 VVMDMAKPFLNSYRHIFCDNFFTTVRLFDH 324
>SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46)
Length = 194
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 462 LLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITWVLSE 283
+ D L+ ++F + + ++ A K P L D S+PE V T S + VLS
Sbjct: 26 MADLLSLTTFPIYTIVQILQYAAGKSPPLNDDSAEVSLPEAVQQRRTKTFRSIVRMVLSS 85
Query: 282 FTL 274
L
Sbjct: 86 TLL 88
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 646 PPPPGKSPNMTSGS---PNPVLESFTAMRYLHARAVSNPPPRQLPCIAAYTV 500
PPP PN TS S P P+ + AM L V +PPP P Y++
Sbjct: 297 PPPAPPLPNFTSPSPPPPPPLPPAMPAMDDLLPPEVLSPPPPPPPSEDFYSM 348
>SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)
Length = 313
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 263 SPKDYVNSIDQFAFCMYLACWNGILSAMYTGYE 165
S D VN++ + CM L ++S + TGY+
Sbjct: 161 SDSDCVNTLVLYQMCMVLTALTSVISILATGYQ 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,465,502
Number of Sequences: 59808
Number of extensions: 511143
Number of successful extensions: 1688
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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