Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20244
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.20 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/56 (21%), Positives = 31/56 (55%)
 Frame = +2

Query: 257  LDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 424
            L + +  +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 859  LPASSTSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 138 KILRSRKELFISGVHSRKYAV 200
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 138 KILRSRKELFISGVHSRKYAV 200
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,200
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)