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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20244
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    87   1e-17
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    87   1e-17
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t...    76   2e-14
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr...    61   1e-09
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    36   0.024
At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas...    35   0.054
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas...    34   0.13 
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    33   0.17 
At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family pr...    33   0.29 
At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas...    33   0.29 
At2g41750.1 68415.m05161 DTW domain-containing protein contains ...    32   0.38 
At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family pr...    32   0.51 
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    30   1.5  
At3g49480.1 68416.m05408 hypothetical protein several hypothetic...    29   2.7  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    29   2.7  
At2g38390.1 68415.m04716 peroxidase, putative similar to peroxid...    29   3.6  
At4g36420.1 68417.m05174 ribosomal protein L12 family protein          29   4.7  
At4g33420.1 68417.m04749 peroxidase, putative identical to class...    29   4.7  
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ...    28   6.2  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   6.2  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   6.2  
At1g54215.1 68414.m06180 proline-rich family protein contains pr...    28   6.2  
At1g21150.1 68414.m02645 mitochondrial transcription termination...    28   6.2  
At3g49120.1 68416.m05366 peroxidase, putative identical to perox...    28   8.3  
At1g25520.1 68414.m03169 expressed protein contains Pfam profile...    28   8.3  

>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 41/86 (47%), Positives = 57/86 (66%)
 Frame = +3

Query: 504 VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPT 683
           V AA++G  LGGGLE A+AC  R+A    K   GLPE+ LG++PG GGTQRLP L  +  
Sbjct: 102 VVAAVEGLALGGGLELAMACHARVAAP--KAQLGLPELTLGVIPGFGGTQRLPRLVGLAK 159

Query: 684 TLDLALTGKTVKADKAKKLGIVDLLV 761
             D+ L  K++ +++  KLG++D LV
Sbjct: 160 ATDMILLSKSISSEEGHKLGLIDALV 185


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTL 689
           AAI G  LGGGLE A+AC  RI+   ++   GLPE+ LG++PG GGTQRLP L  +   L
Sbjct: 107 AAIDGLALGGGLELAMACHARISAPAAQ--LGLPELQLGVIPGFGGTQRLPRLVGLTKAL 164

Query: 690 DLALTGKTVKADKAKKLGIVDLLVSLLDQVWVSLR 794
           ++ LT K VKA++   LG++D +V   + V  + R
Sbjct: 165 EMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARR 199


>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
           AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
           GI:780241, [Mus musculus]GI:6840920; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 229

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 39/85 (45%), Positives = 55/85 (64%)
 Frame = +3

Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTL 689
           AAI+G+ LGGGLE ALAC  RI  +++   FGLPE  L ++PG GGTQRL  L     + 
Sbjct: 71  AAIEGAALGGGLEMALACDLRICGENAV--FGLPETGLAIIPGAGGTQRLSRLVGRSVSK 128

Query: 690 DLALTGKTVKADKAKKLGIVDLLVS 764
           +L  TG+ + A +A   G+V++ V+
Sbjct: 129 ELIFTGRKIDAIEAANKGLVNICVT 153


>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
           protein similar to Delta 3,5-delta2,4-dienoyl-CoA
           isomerase, mitochondrial (ECH1) from Rattus norvegicus
           [SP|Q62651], from Homo sapiens [SP|Q13011]; contains
           Pfam profile PF00378 enoyl-CoA hydratase/isomerase
           family protein
          Length = 278

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 47/82 (57%)
 Frame = +3

Query: 504 VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPT 683
           V AAI G+C+GGG++   AC  R   +D+   F + EV L ++   G  QRLP++     
Sbjct: 117 VIAAIHGACIGGGVDLITACDIRYCSEDAF--FSIKEVDLAIVADLGTLQRLPSIVGYAN 174

Query: 684 TLDLALTGKTVKADKAKKLGIV 749
            ++LALT +     +AK LG+V
Sbjct: 175 AMELALTARRFSGSEAKDLGLV 196


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLP 521
           PPPP    ++   SP+P  E +    Y H    S PPPR LP
Sbjct: 69  PPPPPPPQSLPPPSPSPEPEHYPPPPYHHYITPSPPPPRPLP 110


>At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase /
           CoA-thioester hydrolase (CHY1) identical to gi:8572760;
           contains Pfam profile PF00388 enoyl-CoA
           hydratase/isomerase family protein
          Length = 378

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665
           +T ++   + + G  +GGG   ++  ++RIA ++  T F +PE  LGL P  G +  L  
Sbjct: 102 ATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN--TVFAMPETALGLFPDVGASYFLSR 159

Query: 666 L 668
           L
Sbjct: 160 L 160


>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 422

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665
           ST  +   + + G  +GGG   +   ++RIA ++  T F +PE  LGL P  G +  L  
Sbjct: 142 STYRKPQVSILNGIVMGGGAGLSTNGRFRIATEN--TVFAMPETALGLFPDVGASYFLSR 199

Query: 666 L 668
           L
Sbjct: 200 L 200


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/94 (24%), Positives = 43/94 (45%)
 Frame = +3

Query: 492 ITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALT 671
           + + V A + G  +GGG    + C   IA  ++  G   P+V  G    G G+  +  L 
Sbjct: 170 LPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLV 227

Query: 672 SIPTTLDLALTGKTVKADKAKKLGIVDLLVSLLD 773
                 ++    +   A +A+K+G+++ +V L D
Sbjct: 228 GPKKAREMWFMTRFYTASEAEKMGLINTVVPLED 261


>At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family
           protein low similarity to PhaB [Pseudomonas putida]
           GI:3253198, SP|P31551 Carnitine racemase {Escherichia
           coli}; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 238

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGL-LPGGGGTQRLPALTSIPTT 686
           AA+ G     GL  AL+  Y    KD    + + EV +GL +P       +  + S    
Sbjct: 100 AALNGHAAASGLMFALSHDYVFMRKDRGVLY-MSEVDIGLPVPDYFSALVVAKVGSGIAR 158

Query: 687 LDLALTGKTVKADKAKKLGIVD 752
            +L L+GK +K ++A  LGIVD
Sbjct: 159 RELLLSGKKLKGEEAVALGIVD 180


>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 378

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665
           +T ++   + + G  +G G   ++  ++RIA ++  T F +PE  LGL P  G +  L  
Sbjct: 98  ATYSKPQVSILNGIVMGAGAGVSIHGRFRIATEN--TVFAMPETSLGLFPDVGASYFLSR 155

Query: 666 L 668
           L
Sbjct: 156 L 156


>At2g41750.1 68415.m05161 DTW domain-containing protein contains
           Pfam domain, PF03942: DTW domain
          Length = 253

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 664 AGNLCVPPPPG--KSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQL 524
           AG   +P PP     P+  S SP   +  F ++  L+ R +SNPPP +L
Sbjct: 82  AGGTALPAPPTIYLFPSSPS-SPAVTISEFKSLNLLNHREISNPPPLRL 129


>At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family
           protein low siimilarity to 2-cyclohexenylcarbonyl CoA
           isomerase [Streptomyces collinus] GI:8133118, enoyl-CoA
           isomerase [Escherichia coli] GI:2764829; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 240

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGL-LPGGGGTQRLPALTSIPTT 686
           AA+ G     GL  AL+  Y    KD    + + EV +GL +P          + +    
Sbjct: 102 AALNGHAAAAGLILALSHDYVFMRKDRGVLY-MSEVDIGLSMPDYFSALVRAKIGTSAAR 160

Query: 687 LDLALTGKTVKADKAKKLGIVD 752
            +L L+GK ++ ++A  LGIVD
Sbjct: 161 RELLLSGKKIRGEEAVGLGIVD 182


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLPCIAAYTVSVIVDSSE 476
           PPPP  SP     SP P   S       +   +  P P Q P  ++ T  V   SSE
Sbjct: 618 PPPPSHSPPPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSE 674



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = -2

Query: 784 TQTWSKRETNRSTIPNFFALSAFTVLPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSGS 605
           + T S   T   T  +  +  A  + PV+A + V      +    VP P  +S    S +
Sbjct: 692 SSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQA 751

Query: 604 PNPVLESFTAMRYLHARAVSNPPPRQLP 521
           P P+LE   A    +++ V +P P   P
Sbjct: 752 PTPILEPVHAPT-PNSKPVQSPTPSSEP 778


>At3g49480.1 68416.m05408 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 309

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 573 CDIYMQEQSLIHLLDSCLVLRHIR 502
           C +Y  E S + LL SC VL+H++
Sbjct: 40  CVVYKDEDSHVKLLSSCPVLKHLK 63


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 609 PEVMLGLLPGGGGTQRLPALTSIP 680
           PEV +G+  GGGG Q LPA T +P
Sbjct: 229 PEVRIGVAFGGGGGQSLPA-TELP 251


>At2g38390.1 68415.m04716 peroxidase, putative similar to peroxidase
           isozyme [Armoracia rusticana] gi|217934|dbj|BAA14144;
           identical to cDNA class III peroxidase ATP34,
           GI:17530563
          Length = 349

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +2

Query: 320 IVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENC---KTKEEVV--SLSKRGHEIFR 481
           IVNE+ T+  I A+++      CF+ G D S +++N    +T+++      S RG ++  
Sbjct: 51  IVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVID 110

Query: 482 RIDNHGNRICRNT 520
           R+     R C  T
Sbjct: 111 RMKAAIERACPRT 123


>At4g36420.1 68417.m05174 ribosomal protein L12 family protein
          Length = 179

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 96  NLKVMAN--SKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVN 239
           NL+++++  S++L + +   S  +LF   + SR Y+ PA+Q     K+VN
Sbjct: 3   NLRIISSHFSRVLKSTETRSSSVQLFT--IQSRSYSSPATQSENVSKIVN 50


>At4g33420.1 68417.m04749 peroxidase, putative identical to class
           III peroxidase ATP32 [Arabidopsis thaliana]
           gi|17530547|gb|AAL40837;  identical to cDNA class III
           peroxidase ATP32  GI:17530546
          Length = 325

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +2

Query: 314 SNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI-----ENCKTKEEVVSLSKRGHEI 475
           +++ N ++ +  + A +I      CFI G D S++     +N   K+   +LS RG+EI
Sbjct: 55  NSVNNALQADPTLAAGLIRMLFHDCFIEGCDASILLDSTKDNTAEKDSPANLSLRGYEI 113


>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
           ZF-HD homeobox protein-related predicted proteins,
           Arabidopsis thaliana
          Length = 334

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 646 PPPPGKSPNMTSGSPNPVLESF 581
           PPPP +SPN  S SP P+  S+
Sbjct: 140 PPPPPRSPN--SASPPPISSSY 159


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 709 LPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSG 608
           LPVRA+ +    ++ AG   + PPP  S  +T+G
Sbjct: 55  LPVRAKQQETQPDLEAGQTRLRPPPPVSAAVTNG 88


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 709 LPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSG 608
           LPVRA+ +    ++ AG   + PPP  S  +T+G
Sbjct: 55  LPVRAKQQETQPDLEAGQTRLRPPPPVSAAVTNG 88


>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLP 521
           PPPP  + ++ +G P P       ++ L +     PPPR  P
Sbjct: 61  PPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQPPPRSQP 102


>At1g21150.1 68414.m02645 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 390

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 532 RQLPCIAAYTVSVIVDSSEYFMSSFRQTDNF 440
           +Q PC+ ++TVS +VDS    + S +    F
Sbjct: 49  KQKPCLESFTVSYLVDSCGLSLESAKSNSRF 79


>At3g49120.1 68416.m05366 peroxidase, putative identical to
           peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677
          Length = 353

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +2

Query: 293 TQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENC---KTKEEVV--SL 454
           T ++ E   IVNE+ ++  I A+++      CF+ G D S +++N    +T+++    + 
Sbjct: 45  TNIVRET--IVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNAN 102

Query: 455 SKRGHEIFRRIDNHGNRICRNT 520
           S RG  +  R+     R C  T
Sbjct: 103 SARGFPVIDRMKAAVERACPRT 124


>At1g25520.1 68414.m03169 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 230

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 597 GFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKK 737
           GFGL  +  G   GGGG++ L A        DL   GK+ K D +K+
Sbjct: 81  GFGLWSLWDGFKEGGGGSEEL-AEVEAELDADLKANGKSPK-DSSKR 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,664
Number of Sequences: 28952
Number of extensions: 362138
Number of successful extensions: 1359
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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