BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20244 (797 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 87 1e-17 At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 87 1e-17 At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t... 76 2e-14 At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr... 61 1e-09 At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 36 0.024 At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas... 35 0.054 At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas... 34 0.13 At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro... 33 0.17 At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family pr... 33 0.29 At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas... 33 0.29 At2g41750.1 68415.m05161 DTW domain-containing protein contains ... 32 0.38 At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family pr... 32 0.51 At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 30 1.5 At3g49480.1 68416.m05408 hypothetical protein several hypothetic... 29 2.7 At3g18370.1 68416.m02336 C2 domain-containing protein contains P... 29 2.7 At2g38390.1 68415.m04716 peroxidase, putative similar to peroxid... 29 3.6 At4g36420.1 68417.m05174 ribosomal protein L12 family protein 29 4.7 At4g33420.1 68417.m04749 peroxidase, putative identical to class... 29 4.7 At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 28 6.2 At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 6.2 At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 6.2 At1g54215.1 68414.m06180 proline-rich family protein contains pr... 28 6.2 At1g21150.1 68414.m02645 mitochondrial transcription termination... 28 6.2 At3g49120.1 68416.m05366 peroxidase, putative identical to perox... 28 8.3 At1g25520.1 68414.m03169 expressed protein contains Pfam profile... 28 8.3 >At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty acid multifunctional protein (AIM1) identical to gi:4337025; contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) Length = 721 Score = 87.4 bits (207), Expect = 1e-17 Identities = 41/86 (47%), Positives = 57/86 (66%) Frame = +3 Query: 504 VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPT 683 V AA++G LGGGLE A+AC R+A K GLPE+ LG++PG GGTQRLP L + Sbjct: 102 VVAAVEGLALGGGLELAMACHARVAAP--KAQLGLPELTLGVIPGFGGTQRLPRLVGLAK 159 Query: 684 TLDLALTGKTVKADKAKKLGIVDLLV 761 D+ L K++ +++ KLG++D LV Sbjct: 160 ATDMILLSKSISSEEGHKLGLIDALV 185 >At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2) identical to fatty acid multifunctional protein (AtMFP2) GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty acid beta-oxidation); contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) Length = 725 Score = 87.0 bits (206), Expect = 1e-17 Identities = 44/95 (46%), Positives = 61/95 (64%) Frame = +3 Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTL 689 AAI G LGGGLE A+AC RI+ ++ GLPE+ LG++PG GGTQRLP L + L Sbjct: 107 AAIDGLALGGGLELAMACHARISAPAAQ--LGLPELQLGVIPGFGGTQRLPRLVGLTKAL 164 Query: 690 DLALTGKTVKADKAKKLGIVDLLVSLLDQVWVSLR 794 ++ LT K VKA++ LG++D +V + V + R Sbjct: 165 EMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARR 199 >At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to AU-binding protein/Enoyl-CoA hydratase [Homo sapiens] GI:780241, [Mus musculus]GI:6840920; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein Length = 229 Score = 76.2 bits (179), Expect = 2e-14 Identities = 39/85 (45%), Positives = 55/85 (64%) Frame = +3 Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTL 689 AAI+G+ LGGGLE ALAC RI +++ FGLPE L ++PG GGTQRL L + Sbjct: 71 AAIEGAALGGGLEMALACDLRICGENAV--FGLPETGLAIIPGAGGTQRLSRLVGRSVSK 128 Query: 690 DLALTGKTVKADKAKKLGIVDLLVS 764 +L TG+ + A +A G+V++ V+ Sbjct: 129 ELIFTGRKIDAIEAANKGLVNICVT 153 >At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family protein similar to Delta 3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial (ECH1) from Rattus norvegicus [SP|Q62651], from Homo sapiens [SP|Q13011]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein Length = 278 Score = 60.9 bits (141), Expect = 1e-09 Identities = 31/82 (37%), Positives = 47/82 (57%) Frame = +3 Query: 504 VYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPT 683 V AAI G+C+GGG++ AC R +D+ F + EV L ++ G QRLP++ Sbjct: 117 VIAAIHGACIGGGVDLITACDIRYCSEDAF--FSIKEVDLAIVADLGTLQRLPSIVGYAN 174 Query: 684 TLDLALTGKTVKADKAKKLGIV 749 ++LALT + +AK LG+V Sbjct: 175 AMELALTARRFSGSEAKDLGLV 196 >At3g19320.1 68416.m02450 leucine-rich repeat family protein contains leucine-rich repeats, Pfam:PF00560; Length = 493 Score = 36.3 bits (80), Expect = 0.024 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = -2 Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLP 521 PPPP ++ SP+P E + Y H S PPPR LP Sbjct: 69 PPPPPPPQSLPPPSPSPEPEHYPPPPYHHYITPSPPPPRPLP 110 >At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase / CoA-thioester hydrolase (CHY1) identical to gi:8572760; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein Length = 378 Score = 35.1 bits (77), Expect = 0.054 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = +3 Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665 +T ++ + + G +GGG ++ ++RIA ++ T F +PE LGL P G + L Sbjct: 102 ATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN--TVFAMPETALGLFPDVGASYFLSR 159 Query: 666 L 668 L Sbjct: 160 L 160 >At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative strong similarity to gi:8572760; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein Length = 422 Score = 33.9 bits (74), Expect = 0.13 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +3 Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665 ST + + + G +GGG + ++RIA ++ T F +PE LGL P G + L Sbjct: 142 STYRKPQVSILNGIVMGGGAGLSTNGRFRIATEN--TVFAMPETALGLFPDVGASYFLSR 199 Query: 666 L 668 L Sbjct: 200 L 200 >At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative contains similarity to MENB from Escherichia coli [SP|P27290], Bacillus subtilis [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein Length = 337 Score = 33.5 bits (73), Expect = 0.17 Identities = 23/94 (24%), Positives = 43/94 (45%) Frame = +3 Query: 492 ITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALT 671 + + V A + G +GGG + C IA ++ G P+V G G G+ + L Sbjct: 170 LPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLV 227 Query: 672 SIPTTLDLALTGKTVKADKAKKLGIVDLLVSLLD 773 ++ + A +A+K+G+++ +V L D Sbjct: 228 GPKKAREMWFMTRFYTASEAEKMGLINTVVPLED 261 >At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family protein low similarity to PhaB [Pseudomonas putida] GI:3253198, SP|P31551 Carnitine racemase {Escherichia coli}; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein Length = 238 Score = 32.7 bits (71), Expect = 0.29 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGL-LPGGGGTQRLPALTSIPTT 686 AA+ G GL AL+ Y KD + + EV +GL +P + + S Sbjct: 100 AALNGHAAASGLMFALSHDYVFMRKDRGVLY-MSEVDIGLPVPDYFSALVVAKVGSGIAR 158 Query: 687 LDLALTGKTVKADKAKKLGIVD 752 +L L+GK +K ++A LGIVD Sbjct: 159 RELLLSGKKLKGEEAVALGIVD 180 >At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative strong similarity to gi:8572760; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein Length = 378 Score = 32.7 bits (71), Expect = 0.29 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = +3 Query: 486 STITETVYAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPA 665 +T ++ + + G +G G ++ ++RIA ++ T F +PE LGL P G + L Sbjct: 98 ATYSKPQVSILNGIVMGAGAGVSIHGRFRIATEN--TVFAMPETSLGLFPDVGASYFLSR 155 Query: 666 L 668 L Sbjct: 156 L 156 >At2g41750.1 68415.m05161 DTW domain-containing protein contains Pfam domain, PF03942: DTW domain Length = 253 Score = 32.3 bits (70), Expect = 0.38 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = -2 Query: 664 AGNLCVPPPPG--KSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQL 524 AG +P PP P+ S SP + F ++ L+ R +SNPPP +L Sbjct: 82 AGGTALPAPPTIYLFPSSPS-SPAVTISEFKSLNLLNHREISNPPPLRL 129 >At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family protein low siimilarity to 2-cyclohexenylcarbonyl CoA isomerase [Streptomyces collinus] GI:8133118, enoyl-CoA isomerase [Escherichia coli] GI:2764829; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein Length = 240 Score = 31.9 bits (69), Expect = 0.51 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +3 Query: 510 AAIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGL-LPGGGGTQRLPALTSIPTT 686 AA+ G GL AL+ Y KD + + EV +GL +P + + Sbjct: 102 AALNGHAAAAGLILALSHDYVFMRKDRGVLY-MSEVDIGLSMPDYFSALVRAKIGTSAAR 160 Query: 687 LDLALTGKTVKADKAKKLGIVD 752 +L L+GK ++ ++A LGIVD Sbjct: 161 RELLLSGKKIRGEEAVGLGIVD 182 >At1g49490.1 68414.m05547 leucine-rich repeat family protein / extensin family protein contains similarity to disease resistance protein GI:3894383 from [Lycopersicon esculentum]; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 847 Score = 30.3 bits (65), Expect = 1.5 Identities = 19/57 (33%), Positives = 23/57 (40%) Frame = -2 Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLPCIAAYTVSVIVDSSE 476 PPPP SP SP P S + + P P Q P ++ T V SSE Sbjct: 618 PPPPSHSPPPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSE 674 Score = 28.7 bits (61), Expect = 4.7 Identities = 23/88 (26%), Positives = 37/88 (42%) Frame = -2 Query: 784 TQTWSKRETNRSTIPNFFALSAFTVLPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSGS 605 + T S T T + + A + PV+A + V + VP P +S S + Sbjct: 692 SSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQA 751 Query: 604 PNPVLESFTAMRYLHARAVSNPPPRQLP 521 P P+LE A +++ V +P P P Sbjct: 752 PTPILEPVHAPT-PNSKPVQSPTPSSEP 778 >At3g49480.1 68416.m05408 hypothetical protein several hypothetical proteins - Arabidopsis thaliana Length = 309 Score = 29.5 bits (63), Expect = 2.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 573 CDIYMQEQSLIHLLDSCLVLRHIR 502 C +Y E S + LL SC VL+H++ Sbjct: 40 CVVYKDEDSHVKLLSSCPVLKHLK 63 >At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam profile: PF00168 C2 domain Length = 815 Score = 29.5 bits (63), Expect = 2.7 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 609 PEVMLGLLPGGGGTQRLPALTSIP 680 PEV +G+ GGGG Q LPA T +P Sbjct: 229 PEVRIGVAFGGGGGQSLPA-TELP 251 >At2g38390.1 68415.m04716 peroxidase, putative similar to peroxidase isozyme [Armoracia rusticana] gi|217934|dbj|BAA14144; identical to cDNA class III peroxidase ATP34, GI:17530563 Length = 349 Score = 29.1 bits (62), Expect = 3.6 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Frame = +2 Query: 320 IVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENC---KTKEEVV--SLSKRGHEIFR 481 IVNE+ T+ I A+++ CF+ G D S +++N +T+++ S RG ++ Sbjct: 51 IVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVID 110 Query: 482 RIDNHGNRICRNT 520 R+ R C T Sbjct: 111 RMKAAIERACPRT 123 >At4g36420.1 68417.m05174 ribosomal protein L12 family protein Length = 179 Score = 28.7 bits (61), Expect = 4.7 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +3 Query: 96 NLKVMAN--SKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVN 239 NL+++++ S++L + + S +LF + SR Y+ PA+Q K+VN Sbjct: 3 NLRIISSHFSRVLKSTETRSSSVQLFT--IQSRSYSSPATQSENVSKIVN 50 >At4g33420.1 68417.m04749 peroxidase, putative identical to class III peroxidase ATP32 [Arabidopsis thaliana] gi|17530547|gb|AAL40837; identical to cDNA class III peroxidase ATP32 GI:17530546 Length = 325 Score = 28.7 bits (61), Expect = 4.7 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +2 Query: 314 SNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI-----ENCKTKEEVVSLSKRGHEI 475 +++ N ++ + + A +I CFI G D S++ +N K+ +LS RG+EI Sbjct: 55 NSVNNALQADPTLAAGLIRMLFHDCFIEGCDASILLDSTKDNTAEKDSPANLSLRGYEI 113 >At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ZF-HD homeobox protein-related predicted proteins, Arabidopsis thaliana Length = 334 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 646 PPPPGKSPNMTSGSPNPVLESF 581 PPPP +SPN S SP P+ S+ Sbjct: 140 PPPPPRSPN--SASPPPISSSY 159 >At2g27810.2 68415.m03372 xanthine/uracil permease family protein contains Pfam profile: PF00860 permease family Length = 660 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 709 LPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSG 608 LPVRA+ + ++ AG + PPP S +T+G Sbjct: 55 LPVRAKQQETQPDLEAGQTRLRPPPPVSAAVTNG 88 >At2g27810.1 68415.m03371 xanthine/uracil permease family protein contains Pfam profile: PF00860 permease family Length = 709 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 709 LPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSG 608 LPVRA+ + ++ AG + PPP S +T+G Sbjct: 55 LPVRAKQQETQPDLEAGQTRLRPPPPVSAAVTNG 88 >At1g54215.1 68414.m06180 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 169 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -2 Query: 646 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQLP 521 PPPP + ++ +G P P ++ L + PPPR P Sbjct: 61 PPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQPPPRSQP 102 >At1g21150.1 68414.m02645 mitochondrial transcription termination factor family protein / mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI:4584695; contains Pfam profile PF02536: mTERF Length = 390 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -2 Query: 532 RQLPCIAAYTVSVIVDSSEYFMSSFRQTDNF 440 +Q PC+ ++TVS +VDS + S + F Sbjct: 49 KQKPCLESFTVSYLVDSCGLSLESAKSNSRF 79 >At3g49120.1 68416.m05366 peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677 Length = 353 Score = 27.9 bits (59), Expect = 8.3 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%) Frame = +2 Query: 293 TQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENC---KTKEEVV--SL 454 T ++ E IVNE+ ++ I A+++ CF+ G D S +++N +T+++ + Sbjct: 45 TNIVRET--IVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNAN 102 Query: 455 SKRGHEIFRRIDNHGNRICRNT 520 S RG + R+ R C T Sbjct: 103 SARGFPVIDRMKAAVERACPRT 124 >At1g25520.1 68414.m03169 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016 Length = 230 Score = 27.9 bits (59), Expect = 8.3 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 597 GFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKK 737 GFGL + G GGGG++ L A DL GK+ K D +K+ Sbjct: 81 GFGLWSLWDGFKEGGGGSEEL-AEVEAELDADLKANGKSPK-DSSKR 125 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,588,664 Number of Sequences: 28952 Number of extensions: 362138 Number of successful extensions: 1359 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1318 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1804564000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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