Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20243
(779 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P37108 Cluster: Signal recognition particle 14 kDa prot... 61 3e-08
UniRef50_Q17M28 Cluster: Signal recognition particle, 14kD, puta... 58 2e-07
UniRef50_A7SFX5 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ... 57 4e-07
UniRef50_UPI000065D6E4 Cluster: Signal recognition particle 14 k... 56 1e-06
UniRef50_Q9VDL0 Cluster: CG5417-PA; n=4; Diptera|Rep: CG5417-PA ... 55 2e-06
UniRef50_Q5BRK6 Cluster: SJCHGC07887 protein; n=1; Schistosoma j... 52 2e-05
UniRef50_UPI0000E49971 Cluster: PREDICTED: similar to Signal rec... 50 5e-05
UniRef50_Q01AS4 Cluster: Signal recognition particle, subunit Sr... 48 3e-04
UniRef50_O16927 Cluster: Signal recognition particle 14 kDa prot... 40 0.053
UniRef50_Q86AM4 Cluster: Similar to Homo sapiens (Human). Signal... 37 0.49
UniRef50_A5DA33 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A7QAR1 Cluster: Chromosome chr5 scaffold_72, whole geno... 34 3.5
UniRef50_A7S751 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.5
UniRef50_UPI00004998B3 Cluster: hypothetical protein 46.t00048; ... 33 6.1
UniRef50_Q5K8C4 Cluster: Expressed protein; n=1; Filobasidiella ... 33 8.0
>UniRef50_P37108 Cluster: Signal recognition particle 14 kDa
protein; n=27; Euteleostomi|Rep: Signal recognition
particle 14 kDa protein - Homo sapiens (Human)
Length = 136
Score = 61.3 bits (142), Expect = 3e-08
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>UniRef50_Q17M28 Cluster: Signal recognition particle, 14kD,
putative; n=4; Endopterygota|Rep: Signal recognition
particle, 14kD, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 109
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRD 253
MVLLSN+EFL +LT L Q AR S T+T+KRYDG +P+PR+
Sbjct: 1 MVLLSNEEFLTQLTLLSQSARSDSSFTVTIKRYDGHDRPKPRE 43
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 253 RTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXXA 432
+ P K EY+CL+RA+S+SKK+STVV +V KF +YS +LK++++G A
Sbjct: 45 KPPLPKPAEYQCLIRARSRSKKLSTVVRHDEVAKFMESYSKVLKSNMDGLKKIKKVKNKA 104
Query: 433 MATQ 444
A Q
Sbjct: 105 KAAQ 108
>UniRef50_A7SFX5 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 118
Score = 57.2 bits (132), Expect = 4e-07
Identities = 24/42 (57%), Positives = 35/42 (83%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL ND FL +LT L QK+R AGS+ +T+K+Y+G+++P+PR
Sbjct: 1 MVLLDNDGFLTQLTYLLQKSRTAGSVYITVKKYNGQTRPKPR 42
Score = 46.4 bits (105), Expect = 8e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 277 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVN 396
E KCL RA + KK+ST+V +DV +F AY+N+LK +++
Sbjct: 58 ESKCLFRATNGKKKLSTIVNTKDVNRFQLAYANVLKANMD 97
>UniRef50_UPI000065D6E4 Cluster: Signal recognition particle 14 kDa
protein (SRP14) (18 kDa Alu RNA- binding protein).; n=1;
Takifugu rubripes|Rep: Signal recognition particle 14
kDa protein (SRP14) (18 kDa Alu RNA- binding protein). -
Takifugu rubripes
Length = 103
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +2
Query: 146 EFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
+FL ELT+LFQK R +GS+ +T+K+YDGR+KP PR
Sbjct: 3 QFLTELTRLFQKCRTSGSVVITLKKYDGRTKPVPR 37
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCL+RA KKISTVV ++V KF AYSNLL+ ++G
Sbjct: 50 KCLIRASDGKKKISTVVTTKEVIKFQMAYSNLLRAHMDG 88
>UniRef50_Q9VDL0 Cluster: CG5417-PA; n=4; Diptera|Rep: CG5417-PA -
Drosophila melanogaster (Fruit fly)
Length = 142
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/64 (43%), Positives = 36/64 (56%)
Frame = +1
Query: 253 RTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXXA 432
R P K Y CL+RAQSKS+KISTVV Q DV + YS +K+ ++G A
Sbjct: 78 RPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKVKSKA 137
Query: 433 MATQ 444
AT+
Sbjct: 138 KATK 141
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 98 SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKI 274
S + C I MVLL N F+ L K+ A+ S T+T KRYDG KP PR+ L
Sbjct: 24 SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 83
Query: 275 PNT 283
P T
Sbjct: 84 PET 86
>UniRef50_Q5BRK6 Cluster: SJCHGC07887 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07887 protein - Schistosoma
japonicum (Blood fluke)
Length = 91
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +1
Query: 277 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
E CLLRA ++KISTVV Q+D+ +F+ AYSNLLK +++G
Sbjct: 26 ENSCLLRATLGNQKISTVVHQKDMNRFNQAYSNLLKANIDG 66
>UniRef50_UPI0000E49971 Cluster: PREDICTED: similar to Signal
recognition particle 14kDa (homologous Alu RNA binding
protein); n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to Signal recognition particle 14kDa
(homologous Alu RNA binding protein) -
Strongylocentrotus purpuratus
Length = 86
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 277 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
E+KCL RA + KKISTV+ +DV KF AY+N++K +++G
Sbjct: 27 EHKCLFRATNGKKKISTVISTKDVTKFQMAYANVMKGNMDG 67
>UniRef50_Q01AS4 Cluster: Signal recognition particle, subunit
Srp14; n=2; Ostreococcus|Rep: Signal recognition
particle, subunit Srp14 - Ostreococcus tauri
Length = 222
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRY-DGRSKPQPR 250
MV L ND FL ELTKLF+++R AG++T TMK + KP+P+
Sbjct: 1 MVQLENDAFLTELTKLFERSREAGTVTCTMKIVNENELKPKPK 43
>UniRef50_O16927 Cluster: Signal recognition particle 14 kDa protein
homolog; n=2; Caenorhabditis|Rep: Signal recognition
particle 14 kDa protein homolog - Caenorhabditis elegans
Length = 116
Score = 40.3 bits (90), Expect = 0.053
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = +2
Query: 134 LSNDEFLAELTKLFQKARLAG--SITMTMKRYDGRSKPQPR 250
+ ND+FL +LT ++ +++ G S+ +TMK YDGR+K P+
Sbjct: 8 IPNDQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPK 48
>UniRef50_Q86AM4 Cluster: Similar to Homo sapiens (Human). Signal
recognition particle 14kD; n=2; Dictyostelium
discoideum|Rep: Similar to Homo sapiens (Human). Signal
recognition particle 14kD - Dictyostelium discoideum
(Slime mold)
Length = 123
Score = 37.1 bits (82), Expect = 0.49
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 247 SRRTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLL 381
+ R + E KCL+RA + KKIST+V +D F Y N+L
Sbjct: 44 AERIKESEEEENKCLVRATNGKKKISTIVLAKDKSMFEKNYKNVL 88
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 128 VLLSNDEFLAELTKLFQKARLAGSITMTMKRY 223
+LL ND FL+ L KL+Q G++ +TMK+Y
Sbjct: 1 MLLDNDAFLSALNKLYQTTSKKGTVWVTMKKY 32
>UniRef50_A5DA33 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 287
Score = 35.9 bits (79), Expect = 1.1
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +2
Query: 83 CLHINSNYCC*ILTMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELL 262
CLH++ NY I T ++L + L E T+L +L S+ + R D K E+
Sbjct: 181 CLHLSENY---IETFIVLKAEIKLEESTQLVDFIKL--SMPLFASRQDKVKKATV--EIY 233
Query: 263 QLKIPNTNAYYGHNLRVKRYQQLWNS 340
L++P T+ Y LR+ Y +LW S
Sbjct: 234 LLQVPGTDMEYKITLRITPY-KLWTS 258
>UniRef50_A7QAR1 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 156
Score = 34.3 bits (75), Expect = 3.5
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 83 CLHINSNYCC*ILTM--VLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQ 244
CL + + C + VLL D FL ELT +F+ + S+ +T+KR +SK Q
Sbjct: 20 CLISETKWICVLFLFCQVLLQLDPFLNELTSMFEHSTTKRSVWVTLKRSSLKSKVQ 75
>UniRef50_A7S751 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 2676
Score = 34.3 bits (75), Expect = 3.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 122 TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKIPNTNAY 292
T+ L ++ LTKL A S T+ ++ DG S P+ +L+LK+ + N Y
Sbjct: 852 TLFNLDSNTGALSLTKLIDYGNSARSYTLPVQAQDGGSPPRSSTAMLELKVVDVNDY 908
>UniRef50_UPI00004998B3 Cluster: hypothetical protein 46.t00048;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 46.t00048 - Entamoeba histolytica HM-1:IMSS
Length = 103
Score = 33.5 bits (73), Expect = 6.1
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +1
Query: 286 CLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKT 387
CL+RA + SKK +T+V+ ++V KF++ + ++ T
Sbjct: 62 CLVRATNGSKKFATIVKPKEVGKFNSKLTAIMNT 95
>UniRef50_Q5K8C4 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 171
Score = 33.1 bits (72), Expect = 8.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 184 TISRINHNDYEEI*RP*QTTASRRTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFST 363
T R+ ++D ++ Q R + PE++ L+R + K S + + F
Sbjct: 31 THKRLTYSDDADV----QMNDEERENNSEGPEHEVLIRCTQGNNKFSARIPASSLPSFHA 86
Query: 364 AYSNLLKTSV 393
AY +LLKTS+
Sbjct: 87 AYGSLLKTSM 96
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,616,275
Number of Sequences: 1657284
Number of extensions: 11843186
Number of successful extensions: 28493
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28491
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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