Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.7  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   6.3  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   6.3  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   6.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 236 KPQPRDELLQLKIPNTNAYYGHNLRVKRYQQLWNSVMSKSS 358
           KP     LLQ  IP +  Y+G    +KR+ ++   ++++SS
Sbjct: 44  KPVQILALLQEIIPKS--YFGTTTNLKRFYKVVEKILTQSS 82


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 201 IDPANRAFWKSFVNSAKNSSLLNKTIVK 118
           + P+N    KS +++A  ++L+NK++ K
Sbjct: 3   VQPSNTPPEKSQLSTADTANLINKSLGK 30


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 201 IDPANRAFWKSFVNSAKNSSLLNKTIVK 118
           + P+N    KS +++A  ++L+NK++ K
Sbjct: 3   VQPSNTPPEKSQLSTADTANLINKSLGK 30


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 201 IDPANRAFWKSFVNSAKNSSLLNKTIVK 118
           + P+N    KS +++A  ++L+NK++ K
Sbjct: 3   VQPSNTPPEKSQLSTADTANLINKSLGK 30


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 152 KTHRCSIKPLLKFNNNNWNLY 90
           K H  SIKPLL  N+    +Y
Sbjct: 340 KVHDESIKPLLTLNSVPTEIY 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,099
Number of Sequences: 336
Number of extensions: 3387
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)