Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    31   0.24 
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    28   1.7  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   4.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   7.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   9.2  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.2  

>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
 Frame = +2

Query: 107 CC*ILTMVLLSNDEFLA---ELTKLFQKARLAGSITM------TMKRYDGRSKPQPRDEL 259
           CC   T++ +++DEF+A   +  K F +A  + ++ M      T K Y    K +   EL
Sbjct: 194 CCCFCTILYIAHDEFIAKHPDKIKAFLRAIHSATLDMLKDPVQTYKEYI-HFKREMGSEL 252

Query: 260 LQLKIPNTNAYYGHNLRVKRYQQLWNSVMSKSSQLHIL 373
            + +     AY+ H+  +    + WN V + S +L I+
Sbjct: 253 HREQFERCFAYFSHD--ISNVPRDWNKVTNYSKRLGII 288


>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +2

Query: 128 VLLSNDEFLAELTKLFQ--KARLAGSITMTMK 217
           +LLSN+EFL +LT L Q  +++  GS+ ++ K
Sbjct: 1   MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQK 32


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 203 TMTMKRYDGRSKPQPRDELLQLK 271
           T+ +K+    SKP+P+ ELL+L+
Sbjct: 49  TVAVKKLKNSSKPKPKHELLKLR 71


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354 VLNCIF*SAE-NEC*WFETLEKAQEKSNGDSV 446
           +L C F + + N+C WF  L  A   +NG SV
Sbjct: 480 LLKCTFSNLDGNDCSWFSYLPNAIVLANGTSV 511


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 173 KVSLTLLKTHRCSIKPLLKFNNNNWNLYVSSAVD 72
           K SLT  KT +  +KP  K  N+   +  SS  D
Sbjct: 84  KASLTETKTEKAKVKPKAKKKNSKEKISKSSKQD 117


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 655 MYNTFYTKDNISCASIKYNIQN 720
           MYN   TKDNIS  ++  N +N
Sbjct: 466 MYNRVMTKDNISVITLLENKEN 487


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 161 LTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKIPNTNA 289
           LTKL +  R+ G I +T K   G+S      E+ Q ++P +++
Sbjct: 46  LTKLDKDIRIQGWIRVTTKFLQGKSGSVKVQEIPQDQLPKSSS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,495
Number of Sequences: 5004
Number of extensions: 54660
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)