Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289...    36   0.036

>04_04_1206 +
           31727931-31728048,31728492-31728538,31728782-31728906,
           31729067-31729133,31729221-31729283,31729429-31729498,
           31729751-31729770,31729840-31729956,31730046-31730227,
           31730586-31730640,31731604-31731697,31731791-31731900,
           31733167-31733193,31733510-31733701
          Length = 428

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +2

Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKR 220
           MV+L  D FL+ELT +++++   GS+ +TMKR
Sbjct: 288 MVVLQPDPFLSELTSMYERSTEKGSVWVTMKR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,350
Number of Sequences: 37544
Number of extensions: 302257
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)