Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)                    29   4.2  
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     28   9.8  

>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 122  TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKIPNTNAY 292
            T+  L ++     LTKL      A S T+ ++  DG S P+    +L+LK+ + N Y
Sbjct: 1031 TLFNLDSNTGALSLTKLIDYGNSARSYTLPVQAQDGGSPPRSSTAMLELKVVDVNDY 1087


>SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)
          Length = 201

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 353 FSTSRCSTTVDI-FLLLDCARNKH--LYSGFLTAGVRLEAVVC 234
           FS S CS +  + FL +D  RNK+  L+ GF+    R+ A  C
Sbjct: 36  FSRSTCSLSSTLQFLKIDIWRNKNKSLFFGFIRTTTRIHACSC 78


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 74   PLHCLHINSNYCC*IL--TMVLLSNDEFLAELTKLF 175
            P+HCL+ N +Y C  +  +  LLSN  F  +  K+F
Sbjct: 994  PVHCLNANVSYSCRYVVDSRDLLSNHRFYFDRIKMF 1029


>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 87  KQCSGYYLLKFQHFRKLLLISKIC 16
           +QC+GYY+ KF+      L +K+C
Sbjct: 492 RQCNGYYVYKFEGLPPEYLDAKLC 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,200,252
Number of Sequences: 59808
Number of extensions: 374586
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)