Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20243
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X73459-1|CAA51838.1| 136|Homo sapiens signal recognition partic... 61 4e-09
U07857-1|AAA59066.1| 136|Homo sapiens 18 kDa Alu RNA binding pr... 61 4e-09
BC100031-1|AAI00032.1| 136|Homo sapiens signal recognition part... 61 4e-09
BC071716-1|AAH71716.1| 136|Homo sapiens signal recognition part... 61 4e-09
BC035495-1|AAH35495.1| 136|Homo sapiens signal recognition part... 61 4e-09
AB061546-1|BAB69067.1| 136|Homo sapiens signal recognition part... 61 4e-09
>X73459-1|CAA51838.1| 136|Homo sapiens signal recognition particle
subunit 14 protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>U07857-1|AAA59066.1| 136|Homo sapiens 18 kDa Alu RNA binding
protein protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>BC100031-1|AAI00032.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>BC071716-1|AAH71716.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>BC035495-1|AAH35495.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>AB061546-1|BAB69067.1| 136|Homo sapiens signal recognition
particle 14kD protein.
Length = 136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P+
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPK 42
Score = 51.2 bits (117), Expect = 4e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 283 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,356,264
Number of Sequences: 237096
Number of extensions: 1831185
Number of successful extensions: 6891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6891
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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