Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA...    55   1e-07
BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p pro...    54   3e-07
BT016007-1|AAV36892.1|  288|Drosophila melanogaster RE26656p pro...    29   9.5  
AE014297-419|AAF51902.1|  288|Drosophila melanogaster CG1153-PA ...    29   9.5  

>AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA
           protein.
          Length = 142

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 28/64 (43%), Positives = 36/64 (56%)
 Frame = +1

Query: 253 RTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXXA 432
           R P  K   Y CL+RAQSKS+KISTVV Q DV    + YS  +K+ ++G          A
Sbjct: 78  RPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKVKSKA 137

Query: 433 MATQ 444
            AT+
Sbjct: 138 KATK 141



 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 98  SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKI 274
           S + C I   MVLL N  F+  L K+   A+   S T+T KRYDG  KP PR+    L  
Sbjct: 24  SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 83

Query: 275 PNT 283
           P T
Sbjct: 84  PET 86


>BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p
           protein.
          Length = 120

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +1

Query: 253 RTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 399
           R P  K   Y CL+RAQSKS+KISTVV Q DV    + YS  +K+ ++G
Sbjct: 56  RPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDG 104



 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 98  SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRDELLQLKI 274
           S + C I   MVLL N  F+  L K+   A+   S T+T KRYDG  KP PR+    L  
Sbjct: 2   SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 61

Query: 275 PNT 283
           P T
Sbjct: 62  PET 64


>BT016007-1|AAV36892.1|  288|Drosophila melanogaster RE26656p
           protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 637 NAVIDQMYNTFYTKDNISCASIKYNIQNFIKK 732
           N ++D +Y+    KD++SC  +KY + +F+ K
Sbjct: 37  NDIMDSIYSDCLRKDSVSC--VKYKLFSFVDK 66


>AE014297-419|AAF51902.1|  288|Drosophila melanogaster CG1153-PA
           protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 637 NAVIDQMYNTFYTKDNISCASIKYNIQNFIKK 732
           N ++D +Y+    KD++SC  +KY + +F+ K
Sbjct: 37  NDIMDSIYSDCLRKDSVSC--VKYKLFSFVDK 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,151,005
Number of Sequences: 53049
Number of extensions: 552203
Number of successful extensions: 1323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)