Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-8|AAC25801.1|  116|Caenorhabditis elegans Hypothetical ...    40   0.002
Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical p...    28   6.5  

>AF022973-8|AAC25801.1|  116|Caenorhabditis elegans Hypothetical
           protein F25G6.8 protein.
          Length = 116

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +2

Query: 134 LSNDEFLAELTKLFQKARLAG--SITMTMKRYDGRSKPQPR 250
           + ND+FL +LT  ++ +++ G  S+ +TMK YDGR+K  P+
Sbjct: 8   IPNDQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPK 48


>Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical
           protein T15D6.12 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 240 GLLRPSYLFIVIVIDPANRAFWKSFVNSAKNSSLLNKTIV 121
           G   P Y+F   VID A   + +SF +S K++ + + T++
Sbjct: 324 GTAAPKYVFNATVIDIAQTHWVRSFTDSTKHTKVSDGTLL 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,802
Number of Sequences: 27780
Number of extensions: 302269
Number of successful extensions: 632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)