Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +2

Query: 266 LKIPNTNAYYGHNLRVKRYQQLWNSVMSKSSQLHI 370
           +++PN   +Y  +L +  +  +  S++    +LH+
Sbjct: 301 IQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHV 335


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 215 KRYDGRSKPQPRDELLQLKIPNTNAYYGHNLRVKRYQQLWNS 340
           ++Y   SK + RD   + +   T     +N   K Y   +NS
Sbjct: 279 RKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 215 KRYDGRSKPQPRDELLQLKIPNTNAYYGHNLRVKRYQQLWNS 340
           ++Y   SK + RD   + +   T     +N   K Y   +NS
Sbjct: 290 RKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNS 331


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 417 LFQAFQTINTRFQQIRI 367
           LF  F  ++ RF+Q+RI
Sbjct: 301 LFARFDQLSERFEQLRI 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,912
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)