Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20243
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43640.1 68415.m05424 signal recognition particle 14 kDa fami...    43   3e-04

>At2g43640.1 68415.m05424 signal recognition particle 14 kDa family
           protein / SRP14 family protein similar to SP|P16254
           Signal recognition particle 14 kDa protein (SRP14) {Mus
           musculus}; contains Pfam profile: PF02290 signal
           recognition particle 14kD protein
          Length = 121

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +2

Query: 125 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPR 250
           MVLL  D FL ELT +F+K++  GS+ +T+KR   +SK Q R
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKR 42



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 277 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLK 384
           EY+CL+RA    K +ST V  +D ++F  +Y+ +LK
Sbjct: 52  EYRCLIRATDGKKTVSTSVGAKDHQRFQASYATILK 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,272
Number of Sequences: 28952
Number of extensions: 267677
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)