Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20242
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7X4R9 Cluster: XcbC; n=1; Neisseria meningitidis|Rep: ...    34   4.2  
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella...    33   5.6  

>UniRef50_Q7X4R9 Cluster: XcbC; n=1; Neisseria meningitidis|Rep:
           XcbC - Neisseria meningitidis
          Length = 256

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 226 ILYFLSQVFLIFQCTCISTVKKNHLHCRHINMSCKRVS 339
           IL F +  +   Q  CI    +NH+H   IN++CK ++
Sbjct: 12  ILSFFNSEYTYAQSLCIQQSSQNHIHIAKINLNCKGIN 49


>UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria
           tenella|Rep: RNA polymerase C2 - Eimeria tenella
          Length = 1050

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +3

Query: 528 RLKQ*NVLSKNGKIFQ*KIHISKTELRSDFCHKLFKL--ITIQFRDIIHFTNFTFLQRK 698
           +LK+ N+L KN  IF  K+HI+   +      K FK+  IT+ F ++I+  +++  ++K
Sbjct: 602 KLKKKNILKKNNIIFPIKLHIN-NNIYIFIYFKYFKINNITLSFNNLIYKESYSIYKKK 659


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,402,238
Number of Sequences: 1657284
Number of extensions: 11112485
Number of successful extensions: 23065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23060
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)