Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20242
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    31   0.86 

>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
            C37C3.6c protein.
          Length = 1487

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 98   KYSYYYANNGSNWCILMLYGNRTSRGNRF 12
            K+SYYY N  S+ C    YG      NRF
Sbjct: 1445 KHSYYYYNTASHQCETFTYGGCLGNTNRF 1473


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
            C37C3.6a protein.
          Length = 1558

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 98   KYSYYYANNGSNWCILMLYGNRTSRGNRF 12
            K+SYYY N  S+ C    YG      NRF
Sbjct: 1516 KHSYYYYNTASHQCETFTYGGCLGNTNRF 1544


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 98   KYSYYYANNGSNWCILMLYGNRTSRGNRF 12
            K+SYYY N  S+ C    YG      NRF
Sbjct: 1516 KHSYYYYNTASHQCETFTYGGCLGNTNRF 1544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,896
Number of Sequences: 27780
Number of extensions: 300566
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)