Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20242
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 656 RYYSFHKFYVPPEKMLYLYKI 718
           +Y S HK    PE + Y Y+I
Sbjct: 523 KYDSHHKLIEIPEDLKYFYEI 543


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 656 RYYSFHKFYVPPEKMLYLYKI 718
           +Y S HK    PE + Y Y+I
Sbjct: 523 KYDSHHKLIEIPEDLKYFYEI 543


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 350 KFLSLWLFI*PRVWEPSVYF 409
           K LSL + +  R+W P  YF
Sbjct: 105 KSLSLSIKMLERIWRPDTYF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,451
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)