Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20242
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    29   3.3  
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta...    28   5.7  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    28   5.7  
At1g73600.1 68414.m08521 phosphoethanolamine N-methyltransferase...    27   9.9  

>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 597 FWIYVFFIEKFYHFYLKHFTVL 532
           FW YVF++ +F H +   F VL
Sbjct: 131 FWSYVFYLTRFLHMFRTIFAVL 152


>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
           Pfam profile PF01151: GNS1/SUR4 family
          Length = 281

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 597 FWIYVFFIEKFYHFYLKHFTVL 532
           FW Y F++ +F H +   F+V+
Sbjct: 128 FWSYAFYLSRFLHLFRTFFSVI 149


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 713 CTNIAFSLEERKICEMNNISKLNCYQLK 630
           CT++ FS++   ICE+NN+ +L+  Q K
Sbjct: 229 CTDLLFSIQSG-ICELNNMQELDLSQNK 255


>At1g73600.1 68414.m08521 phosphoethanolamine N-methyltransferase 3,
           putative (NMT3) strong similarity to SP|Q9FR44
           Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103)
           (PEAMT 1) (AtNMT1) {Arabidopsis thaliana}; identical to
           SP|Q9C6B9 Putative phosphoethanolamine
           N-methyltransferase 3 {Arabidopsis thaliana}
          Length = 555

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 590 IQNGATIGFLSQII*VDNNSVSRYYSFHKFYVPPEKML 703
           I+  + +G  S ++     SVS ++S H+F+ P EK++
Sbjct: 17  IERESNLGSASVLMQSKVISVSNFFSIHRFHYPREKIV 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,533
Number of Sequences: 28952
Number of extensions: 248370
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)