Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    44   2e-05
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   0.44 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.3  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.1  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 40/77 (51%)
 Frame = +2

Query: 281 RDYSFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNNKLFFGIVDFDEGSDIFQ 460
           +D++ V +F+A +    C +C+ +  E+  +ANS++     ++ + F   DF +  ++FQ
Sbjct: 48  QDFTTVALFSADSSTMNCDVCRLIEPEFKALANSYKLKYGLDSGIRFTYADFGKNKNLFQ 107

Query: 461 MLRLNTAPVIMHFPAKA 511
              + + P    F  K+
Sbjct: 108 DFSIESVPNFWIFKPKS 124


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 296 VVMFTAMAPARRCAICQHVNDEYLLVANS-FRFSAAYNNKLFFGIVDFDE 442
           V+ + A A   RC++C  VND Y  ++ S  +  A+ +   F  +  F E
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFVE 138


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 102 NMNFKVXXXXXXXXXYYEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKLRNM*SL 275
           N N ++          Y    Q  +KG++    +LT+ TAK S +P NI  +    SL
Sbjct: 389 NWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPTAKYSQLPNNIANIGESNSL 446


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 585 LYPLSDGLSMDASSLKV 535
           LYPLSDG ++D S L+V
Sbjct: 315 LYPLSDGETLDTSHLQV 331


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 289 IIPWRRLHIFLNLFMFNGITDF-FAVISVNCCTFSS 185
           ++P   +  F N+F FNGI  +  A ++   CT+++
Sbjct: 156 LLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAA 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,200
Number of Sequences: 5004
Number of extensions: 64834
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)