Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    30   1.9  
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887     29   4.3  
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512...    29   5.7  
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    28   7.5  

>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 180 GIEEKVQQLTDITAKKSVIPLNI 248
           G+E+ VQQLT IT  K V+PL I
Sbjct: 497 GLEDNVQQLTIITRVKEVLPLMI 519


>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
          Length = 380

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 290 SFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNNKL-FFGIVDFDEGSDIFQML 466
           S  V  TA AP  R  +     DE +    S R S  Y      FG    DEG  +  + 
Sbjct: 90  SAAVSKTAAAPIERIKLLIQNQDEMI---KSGRLSHPYKGIADCFGRTIKDEG--VIALW 144

Query: 467 RLNTAPVIMHFPAKA 511
           R NTA VI +FP +A
Sbjct: 145 RGNTANVIRYFPTQA 159


>03_06_0514 +
           34450178-34450244,34450821-34451047,34451140-34451275,
           34451818-34451951,34452037-34452142,34452602-34452687,
           34453204-34453365,34453918-34454034,34454222-34454464
          Length = 425

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 357 MNICWWPTHLDSQLL 401
           +++CWWP H  S LL
Sbjct: 8   LSVCWWPPHFKSPLL 22


>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 757 QSRRTQHKLPITVYCRGTRGCFYGYKENQPI**RELKKLQPLSNLVIGRLESVHQFC 587
           +S R Q KL +    R  +   Y YK+N+ +    LK    L+  ++G +ES  Q C
Sbjct: 318 ESIRNQRKLQVGTGARSEKIRTYNYKDNR-VTDHRLKMNFELTGFLMGDIESAVQSC 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,103,165
Number of Sequences: 37544
Number of extensions: 384353
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)