Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   2e-27
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score =  119 bits (287), Expect = 2e-27
 Identities = 48/84 (57%), Positives = 68/84 (80%)
 Frame = +2

Query: 257 KEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNNKLFFGIVDF 436
           + Y+++ PR+YS ++M TA+AP R+CAIC+  ++EYL++ANS+R+S  Y N+LFF +VDF
Sbjct: 57  RTYLRASPRNYSVILMLTALAPHRQCAICREAHNEYLIIANSWRYSQQYTNRLFFAMVDF 116

Query: 437 DEGSDIFQMLRLNTAPVIMHFPAK 508
           DEG D+F  LRLN+APV MHFP K
Sbjct: 117 DEGPDVFNALRLNSAPVFMHFPPK 140



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +1

Query: 601 QIRVFRSPNYSAAVAFSTLFIILAGFLYIRRNNLEFLYNKQLWAVCAV 744
           ++RVFR PNY  A+A   L +++ G LYIRR NLEFLYNK  WA+ A+
Sbjct: 248 EVRVFRPPNYMGAIALGLLVVLIGGLLYIRRKNLEFLYNKSYWAMGAL 295


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +1

Query: 508 SKPKPADTMDFERAGIHAEAIAKWIQDRTDVQIRVFRSPNYSAAVAFSTLFIILAGFLYI 687
           S+ K A T++ + A ++  ++ K  +D        F+  NY++A+ F T  I L   +  
Sbjct: 163 SRSKMAATVEVKEADVYVLSLEKEAEDLKLKANGYFKEGNYNSAITFYTQAIELKADVPA 222

Query: 688 RRNNLEFLYNK 720
              N  F Y K
Sbjct: 223 YYGNRSFCYLK 233


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 476 TAPVIMHFPAKANLSLLTQWTLRELASMLRPSLSGYR 586
           T P + H+   ++ S+L QW     +S+   +L GYR
Sbjct: 348 TPPTLTHYSNSSSTSILLQWAAIPASSIKDGALLGYR 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,724,535
Number of Sequences: 59808
Number of extensions: 464190
Number of successful extensions: 1021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)