Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical pr...    94   1e-19
AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical ...    29   2.9  

>L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK686.3 protein.
          Length = 331

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
 Frame = +2

Query: 257 KEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNN--KLFFGIV 430
           K  V+  PR+YS +VMFTA++P  +C IC+   DE+++VANS R++++  +  K+FFGIV
Sbjct: 39  KTLVRMQPRNYSMIVMFTALSPGVQCPICKPAYDEFMIVANSHRYTSSEGDRRKVFFGIV 98

Query: 431 DFDEGSDIFQMLRLNTAPVIMHFPAK 508
           D+++   IFQ + LNTAP++ HF  K
Sbjct: 99  DYEDAPQIFQQMNLNTAPILYHFGPK 124



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
 Frame = +1

Query: 508 SKPKPADTMDFERAGIHAEAIAKWIQDRTDVQIRVFRSPNYSAAVAFSTLFIILAGFLYI 687
           +K +P + MDF+R G  A+AI +++ D+T+V +RV R PNY+A V  +    +L G LY+
Sbjct: 127 AKKRP-EQMDFQRQGFDADAIGRFVADQTEVHVRVIRPPNYTAPVVIALFVALLLGMLYM 185

Query: 688 RRNNLEFLYNKQLWA-VC-AVFFCF 756
           +RN+L+FL+N+ +W  VC A+ F F
Sbjct: 186 KRNSLDFLFNRTVWGFVCLAITFIF 210



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +3

Query: 150 YEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKLRNM 266
           YE A Q   + +E+KVQ L D+T+++S++  N++K + +
Sbjct: 6   YESAQQ---QTLEDKVQNLVDLTSRQSIVKFNMDKWKTL 41


>AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical
           protein Y11D7A.13 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +2

Query: 389 FSAAYNNKLFFGIVDFDEGSDIFQMLRLN-------TAPVIMHFPAKANLSLLTQWTLRE 547
           F  A+N++L   + D  E   +FQM+R++          +  H    +N SL+   + + 
Sbjct: 323 FPNAHNDELVLFVADQHENDSVFQMIRVSERNEKSIRQAIQEHLQKVSNRSLMMNISSKI 382

Query: 548 LASMLRPSLSGYRTELMYRFESS 616
              + +  +  +RTE   R +SS
Sbjct: 383 NVPLSQQMIDQWRTEEFIRLDSS 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,437
Number of Sequences: 27780
Number of extensions: 360831
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)