Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.62 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.62 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.62 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.6  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 721 QLWAVCAVFFCFAMCLGRCGIKLE 792
           +LW  C V  C A  L  C I L+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIALD 133


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 721 QLWAVCAVFFCFAMCLGRCGIKLE 792
           +LW  C V  C A  L  C I L+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIALD 133


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 721 QLWAVCAVFFCFAMCLGRCGIKLE 792
           +LW  C V  C A  L  C I L+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIALD 133


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 333 VLSVSMLTMNICWWPTHLDSQL 398
           +LS  ++T  ICW P H+   L
Sbjct: 261 MLSAVVITFFICWAPFHVQRLL 282


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 799 WWPLI*FHICPDTLQSRRTQHKLPITVYCRG 707
           W   +  HI P  L  RR Q+K     Y  G
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSSG 374


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 799 WWPLI*FHICPDTLQSRRTQHKLPITVYCRG 707
           W   +  HI P  L  RR Q+K     Y  G
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSSG 374


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 464 TFGRYLSLHQNQQYQRIIYYCKQ 396
           TFGR  S H N  Y   I + ++
Sbjct: 594 TFGRLTSKHDNSLYDEYIPFLER 616


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 724 LWAVCAVFFCFAMCLGRCGIKLE 792
           +W    V+ C A  L  C I L+
Sbjct: 140 IWLAVDVWMCTASILNLCAISLD 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,137
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)