Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20241
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarit...    36   0.041
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    31   0.67 
At5g59010.1 68418.m07392 protein kinase-related low similarity t...    29   2.7  
At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa s...    29   4.7  
At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondri...    28   6.3  

>At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarity
           to SP|Q13454 N33 protein {Homo sapiens}; contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 346

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +2

Query: 272 SPPRDYSFVVMFTAMAPARRCAI-CQHVNDEYLLVANSF--RFSAAYNNKLFFGIVDFDE 442
           S PR YS +V F A     +  +  Q +  E+ +V+ SF    + +   KLFF  ++F +
Sbjct: 65  STPRPYSLLVFFDATQLHSKNELRLQELRREFGIVSASFLANNNGSEGTKLFFCEIEFSK 124

Query: 443 GSDIFQMLRLNTAPVI-MHFPAKANL 517
               FQ+  +N  P I +  P+ +NL
Sbjct: 125 SQSSFQLFGVNALPHIRLVSPSISNL 150


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -1

Query: 307 EHHYK*IIPWRRLHIFLNLFMFNGITDFFAVISVNCCTFSSIPLARGCAA 158
           E+H K I+  R+ H+FL +F F+G T+   +   N  T S +P ++G  A
Sbjct: 506 EYHSKHIVYSRKRHLFLVVFEFSGATNEVVLYWEN--TGSQLPNSKGSTA 553


>At5g59010.1 68418.m07392 protein kinase-related low similarity to
           serine/threonine/tyrosine-specific protein kinase APK1,
           Arabidopsis thaliana, SP|Q06548 PIR:S28615; contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 489

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 357 MNICWWPTHLDS 392
           +++CWWPTHL S
Sbjct: 8   LSLCWWPTHLKS 19


>At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile
           PF05850: NADH-ubiquinone oxidoreductase 19 kDa subunit
           (NDUFA8); similar to NADH-ubiquinone oxidoreductase 19
           kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-19KD)
           (CI-19KD) (Complex I-PGIV) (CI-PGIV) (Swiss-Prot:P51970)
           [Homo sapiens]
          Length = 108

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 727 ITVYCRGTRGCFYGYKENQPI**RELKKLQPLSNLVIGRLESVHQFCP 584
           I + C      F   K+N P   + L+K + ++  V+G L+ +HQ CP
Sbjct: 27  IGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGLLKDLHQRCP 74


>At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondrial
           / ADP/ATP translocase 2 / adenine nucleotide
           translocator 2 (ANT2) identical to SWISS-PROT:P40941
           ADP,ATP carrier protein 2, mitochondrial precursor
           (Adenine nucleotide translocator 2) [Arabidopsis
           thaliana]
          Length = 385

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 290 SFVVMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNN-KLFFGIVDFDEGSDIFQML 466
           S  V  TA AP  R  +     DE L      R +  Y   +  FG    DEG  I  + 
Sbjct: 94  SAAVSKTAAAPIERVKLLIQNQDEMLKAG---RLTEPYKGIRDCFGRTIRDEG--IGSLW 148

Query: 467 RLNTAPVIMHFPAKA 511
           R NTA VI +FP +A
Sbjct: 149 RGNTANVIRYFPTQA 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,564
Number of Sequences: 28952
Number of extensions: 325640
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)