Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20240
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.57 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    28   1.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    28   1.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   7.1  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   7.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   7.1  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 203  YHSDEYHEVLRHESDLPHQYPVSLSLHH---KSTWSCR--KEKVTFRNGIHVDISCCS 361
            YH ++YH  L     LP   PV+LSLH+   +  W  R   EK    +  ++  S CS
Sbjct: 1278 YHMNDYHGSLAPLYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEEVCSVFNISKSVCS 1335


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 YHSDEYHEVLRHESDLPHQYPVSLSLHH 286
           YH ++YH  L    +LP   P ++SLH+
Sbjct: 387 YHINDYHGALAPIYNLPEVIPCAISLHN 414


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 719 WTIRYYYELLSFVRHSVLTLFKIVLF 642
           W IRY Y  L    HS+L LF I  F
Sbjct: 438 WLIRYIYVPLGGSNHSILNLFIIFTF 463


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 203  YHSDEYHEVLRHESDLPHQYPVSLSLHH 286
            YH ++YH  L     LP   PV++SLH+
Sbjct: 1304 YHVNDYHGALAPLYLLPEVIPVAVSLHN 1331


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 62  SETSLRYYKKIR-NRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFV 196
           SE +L+Y  + R N WI   W     + P L    L +++ P++ +
Sbjct: 294 SEEALQYITRSRVNLWIAHYWKDFHPRWPFLHRGTLKVDEAPVELL 339


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 203  YHSDEYHEVLRHESDLPHQYPVSLSLHH 286
            YH ++YH  L     LP+  P  LSLH+
Sbjct: 1271 YHINDYHGALAPCYLLPNVIPCVLSLHN 1298


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +2

Query: 347 ISCCSSAFNVCFDGYYINFKIWSSVVQIKA 436
           + CC+S  ++ F  YY+++K +  +  I++
Sbjct: 51  VECCASLCSLIFSKYYLHYKTFRILTIIQS 80


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 203  YHSDEYHEVLRHESDLPHQYPVSLSLHH 286
            YH ++YH  L     LP   P +LSLH+
Sbjct: 1276 YHINDYHGALAPCYLLPDIIPCALSLHN 1303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,131
Number of Sequences: 5004
Number of extensions: 58653
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)