Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20240
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0441 + 3130906-3131424,3131847-3132269                           30   1.8  
07_01_0220 - 1631395-1631496,1632063-1634036                           29   4.2  
12_01_0389 + 3067808-3069121                                           29   5.6  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    28   9.7  

>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 492 LFVHKLHLHSIHLGQHMWCALICTTELQIL 403
           L  ++LH H IHL  ++ CAL C+  + +L
Sbjct: 280 LMFYRLHAHGIHLVLNLSCALQCSRSVVLL 309


>07_01_0220 - 1631395-1631496,1632063-1634036
          Length = 691

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 34  TKLSETVSY*RNFTSLL*ENKKSLDCFHLVYNPS*TAS 147
           T + E  S  RNF  L    KK  D + + YNPS T S
Sbjct: 623 TPVPELASTHRNFNELASMRKKGFDPYIMSYNPSSTGS 660


>12_01_0389 + 3067808-3069121
          Length = 437

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 56  VTSETSLRYYKKIRNRWIVSIWSTTPHKQPPLDLTEL 166
           VTS T + Y ++  +RW+ +  S+ P    PL L++L
Sbjct: 22  VTSPTGISYDRRAIHRWLAAGHSSCPVTGHPLSLSDL 58


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 200 PYHSDEYHEVLRHESDLPHQYPVSLSLHHKS 292
           P++++  + ++RH    P +YP ++S H KS
Sbjct: 207 PFYTNSVYALIRHIVKDPVKYPENMSAHFKS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,833
Number of Sequences: 37544
Number of extensions: 324771
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)