Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20240
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   3.2  
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               28   7.5  
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     28   9.9  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_11171| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-14)               28   9.9  

>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 107 IVSIWSTTPHKQPPLDLTELNIEKL 181
           ++SIWS  PH++  +D T+ N EK+
Sbjct: 236 LISIWSARPHQKTSVDGTDDNEEKI 260


>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 362 SAFNVCFDGYYINFKIWSSVVQIKAHHI 445
           +   + F+ Y+INFK++ +VV+ K  H+
Sbjct: 90  TGMTLTFNYYFINFKVFVNVVKYKLDHV 117


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 56  VTSETSLRYYKKIRNRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEY 220
           +T E S+R+Y+       + ++   P  +P L        KL   F A YH++EY
Sbjct: 408 LTCEPSIRHYRPC-----IFVYMDIPFGKPDLKFGITGDNKLEFPFKAVYHNNEY 457


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 324 LEMAFMLIYPAVAVLSMFVLMVIILIL 404
           ++ AFML+     +L +F+L+V++L++
Sbjct: 59  IKQAFMLLLVVAVMLFLFILLVVVLVV 85


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 200  PYHSDEYHEVLRHESDLPHQYPV 268
            PY+S  Y+  + H  D PH+ P+
Sbjct: 1986 PYYSSYYYHKMTHTKDRPHKCPL 2008


>SB_11171| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-14)
          Length = 199

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 200 PYHSDEYHEVLRHESDLPHQYPV 268
           PY+S  Y+  + H  D PH+ P+
Sbjct: 59  PYYSSYYYHKMTHTKDRPHKCPL 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,667,227
Number of Sequences: 59808
Number of extensions: 405030
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)