Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20240
         (788 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060444-1|AAL25483.1|  162|Drosophila melanogaster LD47606p pro...    50   3e-06
AE014296-1228|AAF50580.1|  162|Drosophila melanogaster CG8600-PA...    50   3e-06

>AY060444-1|AAL25483.1|  162|Drosophila melanogaster LD47606p
           protein.
          Length = 162

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 98  NRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEY-HEVLRHESDLPHQYPVSL 274
           NRW+VSIWS TPH QPPLD TEL       +F    H   +  +V+    DL    PV  
Sbjct: 66  NRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPTTHQQVFPDDVVIGVDDLE---PVHS 122

Query: 275 SLHH 286
           + HH
Sbjct: 123 AHHH 126


>AE014296-1228|AAF50580.1|  162|Drosophila melanogaster CG8600-PA
           protein.
          Length = 162

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 98  NRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEY-HEVLRHESDLPHQYPVSL 274
           NRW+VSIWS TPH QPPLD TEL       +F    H   +  +V+    DL    PV  
Sbjct: 66  NRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPTTHQQVFPDDVVIGVDDLE---PVHS 122

Query: 275 SLHH 286
           + HH
Sbjct: 123 AHHH 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,971,081
Number of Sequences: 53049
Number of extensions: 588736
Number of successful extensions: 1326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)