Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20240
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.46 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.46 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 640 QLVSNKHLFLFFI---FVDYIKSKTKCSIFENVTGTLVTCSIFSYLIDYAYDTFC 485
           Q+V N HL  F +   F DY  SKT    +  +   L+    FSY +   Y   C
Sbjct: 199 QVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 640 QLVSNKHLFLFFI---FVDYIKSKTKCSIFENVTGTLVTCSIFSYLIDYAYDTFC 485
           Q+V N HL  F +   F DY  SKT    +  +   L+    FSY +   Y   C
Sbjct: 199 QVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 175 FNV*LSQVKRRLFMRGCRPDGNNPAIS 95
           FN    +  +R+  +G R  GN P+ S
Sbjct: 328 FNTEFREAFKRILTKGARARGNQPSTS 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,101
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)