Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20239
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    43   4e-05
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    27   2.3  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   4.1  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   9.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   9.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   9.4  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.4  

>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 30/40 (75%)
 Frame = +2

Query: 584 AMLDLIGTSIMYIGLTLTYISSFQMFRGSIIVFVAVLSMT 703
           A++D+ G+++M +GL  T  S +QM RGS+I+FVA+ + T
Sbjct: 82  AIMDICGSTLMNVGLLYTSASIYQMTRGSLIIFVALFATT 121


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 635 TYISSFQMFRGSIIVFVAVLSMTFSNKQSSKEN 733
           T ISSF MF GS++   ++  +T  +K  + EN
Sbjct: 106 TSISSFTMFFGSVLALGSICFLTSFHKDVTLEN 138


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 318 YQKFLALMMLV---TGSINSLSTKWADILKSKGSDGEERYFN---HPFLQTLS 458
           Y K L LM+ V   T  +NS + ++ + L+S+GS+    Y N    P L++L+
Sbjct: 622 YGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLN 674


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 LKLEETLILLVTFIKQDGLDKLPEVPRPDDV 346
           LK+  T +L +T I   GL K+P   +P D+
Sbjct: 156 LKIYSTRVLNLTLIDLPGLTKIPVGDQPTDI 186


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 384 ADILKSKGSDGEERYFNHPFLQTLSMFLGEMLC 482
           +++L SK  D   +YF    L  L +F+  +LC
Sbjct: 25  SNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLC 57


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 330 LALMMLVTGSINSLSTKWAD 389
           +A +++  G +NSLST+W D
Sbjct: 193 MAAVIVFHGLVNSLSTRWLD 212


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 612 MDVPIKSNIAAGIRIKGLKFCVPAVNECPPVFRVFNTP 499
           +D+  + +I   IR K L+    A   C P+F V N P
Sbjct: 593 LDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNP 630


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 649 FPNVPWVYHCLCG---CAVHDILQQTVIKREWLGLCASSSD 762
           FPN PWVY+        +++D L   +++   L    ++SD
Sbjct: 499 FPNYPWVYYSNISTFTMSMNDTLSSGILENAALSATQNNSD 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,592
Number of Sequences: 5004
Number of extensions: 75414
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)