Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20239
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1027 + 8011609-8011814,8011893-8012063,8012145-8012286 31 0.79
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 30 1.8
06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874 30 1.8
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 29 4.2
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 29 5.6
08_01_0807 - 7802214-7802382,7802461-7802837 28 7.4
05_07_0317 - 29193940-29193978,29194208-29194496,29194579-291947... 28 7.4
05_03_0266 + 11303932-11304072,11304150-11304185,11304640-113049... 28 7.4
04_03_0364 - 14948966-14949016,14949374-14949662,14949745-149499... 28 7.4
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 28 7.4
03_02_0367 + 7834072-7834479,7834555-7834779,7834858-7835082,783... 28 7.4
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223... 28 9.8
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317... 28 9.8
>06_01_1027 + 8011609-8011814,8011893-8012063,8012145-8012286
Length = 172
Score = 31.5 bits (68), Expect = 0.79
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC KN F++S + +L +D + V +
Sbjct: 48 KDLFDLYRLRAVDTSLIKCYSLLSWQWCQKNAPE-VAFLDSQVVNVTNLQNDRQGMVNY- 105
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 106 --IYDTLW 111
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC KNT F++ + +L +D + V +
Sbjct: 726 KDLFDLYRLRAVDTCLLKCYSLLSWQWCKKNTPE-VAFLDPQVVTVTNLQNDRQGMVNY- 783
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 784 --IYDTLW 789
>06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874
Length = 203
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++S R +KCY L WC KN F++ + +L +D + V +
Sbjct: 88 KDLFDLYSLRAVDTSLLKCYSLLSWQWCQKNAPE-VAFLDPQVVTVTNLQNDRQGMVNY- 145
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 146 --IYDTLW 151
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC K+ F+N + +L +D + D
Sbjct: 566 KDLFDLYRLRAVDTSLLKCYSLLSWQWCQKHAPE-VVFLNPQVVTVTNLQNDRQGMCPLD 624
Query: 601 WNIHNVYWFDSNLHQQFP 654
+ HN D N + P
Sbjct: 625 PSGHNSR-IDKNAYDWTP 641
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 709 GECHGQHSHKDNDRPTEHLETADVG*SQTNIHYGCSNQIQHS 584
G H S N+ PT H++ +D G SQ + YG + + S
Sbjct: 4 GNPHDFFSQSFNEAPTGHMDGSDYGFSQGSSGYGSRSTVPPS 45
>08_01_0807 - 7802214-7802382,7802461-7802837
Length = 181
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++S R +KCY L WC K+ F++ + +L +D + V +
Sbjct: 105 KDLFDLYSLRAVDTSLLKCYSLLSWQWCQKHAPE-VAFLDPQVVTVTNLQNDRQGMVNY- 162
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 163 --IYDTLW 168
>05_07_0317 -
29193940-29193978,29194208-29194496,29194579-29194749,
29194829-29195715,29195803-29196249,29196328-29197056
Length = 853
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC+K+ F++ + +L +D + V +
Sbjct: 667 KDLFDLYRLRAVDTSLLKCYSLLSWQWCLKHAPE-VAFLDPQVVTVTNLQNDRQGMVNY- 724
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 725 --IYDTLW 730
>05_03_0266 +
11303932-11304072,11304150-11304185,11304640-11304903,
11305157-11305524,11305603-11305773,11305853-11306141,
11306373-11306393
Length = 429
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC KN F++ +++L +D + V +
Sbjct: 249 KDLFDLYRLRAVDTNILKCYSLLSWQWCQKNAPE-VAFLDPQVVTVRNLENDRQGMVNY- 306
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 307 --IYDTLW 312
>04_03_0364 -
14948966-14949016,14949374-14949662,14949745-14949915,
14949994-14950199
Length = 238
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC KN F++ + +L +D + V +
Sbjct: 48 KDLFDLYRLRAVDTSLLKCYSLLSWQWCQKNAPE-VAFLDPQVVTVTNLQNDRQGMVNY- 105
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 106 --IYDTLW 111
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -1
Query: 484 KHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISAHFVLKELIEP 353
KH ++ + K+ W S+PS P +H V L+ P
Sbjct: 39 KHEVAKAEASSLKKSRWYMIKSNPSSPLTTQRESHKVSTHLVRP 82
>03_02_0367 +
7834072-7834479,7834555-7834779,7834858-7835082,
7835333-7836219,7836298-7836468,7836551-7836839,
7836925-7836963,7837069-7837107
Length = 760
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC KN F++ + +L +D + V +
Sbjct: 561 KDLFDLYMLRAVDTSLLKCYSLLSWQWCQKNAPE-VAFLDPQVVTVTNLQNDRQGMVNY- 618
Query: 601 WNIHNVYW 624
I++ W
Sbjct: 619 --IYDTLW 624
>02_04_0663 +
24820745-24821065,24821415-24821861,24821949-24822317,
24822324-24822835,24822914-24823084,24823284-24823434,
24823664-24823702
Length = 669
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 421 KDISTIHSCRPYLCFWVKCYVYLCSNWCIKNTEHWGTFINSWNTKLQSLNSDARSYVGFD 600
KD+ ++ R +KCY L WC K+ F++ + +L +D + V +
Sbjct: 529 KDLFDLYRLRAMDTSLLKCYSLLSWQWCQKHAPEI-AFLDPQVVTVTNLQNDHQEMVNY- 586
Query: 601 WNIHNVYW 624
I+N W
Sbjct: 587 --IYNTLW 592
>01_04_0102 +
16030094-16030462,16030595-16030714,16031715-16031792,
16032760-16032933,16033844-16033921,16034338-16034510,
16034757-16034912,16036460-16036621,16036815-16036826,
16036947-16036962,16037663-16037875
Length = 516
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 417 EERYFNHPFLQTLSMFLG 470
E RYF HP+ Q+LS F G
Sbjct: 349 EARYFKHPYDQSLSTFRG 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,741,446
Number of Sequences: 37544
Number of extensions: 420851
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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