Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20239
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)                    29   3.3  
SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)                29   4.3  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              29   5.7  
SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 28   10.0 
SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39)                    28   10.0 
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1395

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 601  WNIHNVYWFDSNLHQQFPNV--PWVYHCL-CGCAVHDILQQTVIKREWLGLCAS 753
            W   N+ WF+S+   Q  +   P+  H +  G AV    Q    + EW+G C++
Sbjct: 1079 WAQGNIRWFESDYRCQCEDCGKPYKLHDIKAGFAVTRFQQLEPFREEWIGWCST 1132


>SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)
          Length = 159

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 630 VKPIYIMDVPIKSNIAAGIRI-----KGLKFCVPAVNECPPVFRVFN 505
           + P+Y    PI +N++ GIR+       L+FC  +V E   V R  N
Sbjct: 58  LSPVYFRRPPISNNVSEGIRVTTHHLAALRFCGCSVTEPATVLRPKN 104


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 427 ISTIHSCRPYLCFWVKC-YVYLCSNWCIKNTEH 522
           I+T+ +  PY+C+W++    +LC +W   + +H
Sbjct: 68  INTVLNKDPYVCYWIRTGCCHLCWHWRPLHVDH 100


>SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -3

Query: 275 LMFLQVLIYSNFIIICQIIAFFYSIVLI*NISHNICRTQSKIIVN 141
           ++ L +++ SN+ II  IIAF   I++I  I   +    SKII+N
Sbjct: 237 IITLVIILNSNYFIIIIIIAFIIVIIIISKII--MVMMISKIIIN 279


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 436 WLKYLSSPSDPFDFNISAHFVLKELIEPVTNIIR 335
           WL Y+SS + P+ + +    + KEL++ +  ++R
Sbjct: 446 WLMYMSSLTTPYVYTLLNRRLRKELVQAIKAMVR 479


>SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39)
          Length = 230

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 777 TPTIKVR**RTQSEPFSFDDCLLENVMDSTATKTMID 667
           TPTI+       + PF++DD  LE +MD +   T+ D
Sbjct: 134 TPTIRKNLNPQWNFPFTYDDVTLEELMDRSLELTVWD 170


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -3

Query: 275 LMFLQVLIYSNFIIICQIIAFFYSIVLI*NISHNICRTQSKIIVN 141
           ++ L +++ SN+ II  IIAF   I++I  I   +    SKII+N
Sbjct: 68  IITLVIILNSNYFIIIIIIAFIIVIIIISKII--MVMMISKIIIN 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,811,661
Number of Sequences: 59808
Number of extensions: 517083
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)