Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20239
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 557 FNPLILMPAAMLDLIGTSIMYIGLTLTYISSFQMFRGSIIVFVAVLSMTFSNKQSS--KE 730
           FNP +  P A+ D++GTSIMYIGL LT  SSFQM RG++I+F  +LS+   N Q    K 
Sbjct: 94  FNPFLFFPPALCDILGTSIMYIGLNLTTASSFQMLRGAVIIFTGLLSVGMLNAQIKPFKW 153

Query: 731 NGSDCVRHHRTLIVGVTDALY 793
            G   V     +IVGVTD  Y
Sbjct: 154 FGMLFVM-LGLVIVGVTDIYY 173



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 42/59 (71%)
 Frame = +3

Query: 330 LALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVY 506
           +++MM+VTGS+N++  KWAD +K+ G       FNHPFLQ   MF GE LCL+VF L++
Sbjct: 8   ISVMMVVTGSLNTICAKWADSIKADGVP-----FNHPFLQATCMFFGEFLCLVVFFLIF 61


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 303 MAWTNYQKFLALMMLVTGSINSLST 377
           ++WT++   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 303 MAWTNYQKFLALMMLVTGSINSLST 377
           ++WT++   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,964,181
Number of Sequences: 27780
Number of extensions: 412883
Number of successful extensions: 1060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)