Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20239
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.7  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 496 NWCIKNTEHWGTFINSWNTKLQ 561
           ++ +  TE W +FIN W  KL+
Sbjct: 383 DYVVLETE-WSSFINPWTKKLE 403


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 496 NWCIKNTEHWGTFINSWNTKLQ 561
           ++ +  TE W +FIN W  KL+
Sbjct: 89  DYVVLETE-WSSFINPWTKKLE 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 475 ISPKNIDKVCKNGWL 431
           +SP   D +C NGW+
Sbjct: 365 LSPSIHDNICSNGWI 379


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 251 KLKLEETLILLVTFIKQDGLDKLPEVPRP 337
           ++ L  T +L +TF+  +    LP+VP P
Sbjct: 245 RVSLGITTVLTMTFLGLEARTDLPKVPYP 273


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 691 AVHDILQQTVIKREWLGLCASSSDFDRGSY 780
           A+H++ +    K +  GLC S +++DRG +
Sbjct: 343 ALHNLQKDVCSKLK--GLCPSMANYDRGVF 370


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 691 AVHDILQQTVIKREWLGLCASSSDFDRGSY 780
           A+H++ +    K +  GLC S +++DRG +
Sbjct: 433 ALHNLQKDVCSKLK--GLCPSMANYDRGVF 460


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
 Frame = +1

Query: 466 WVKCYVYLCSNWCI-------KNTEHWGTFINSWNTK 555
           W+  Y  +   W I       ++   WG+  N WNTK
Sbjct: 72  WMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTK 108


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 270 VSSSFNLQ*FYNHMSNYRIFLFDCINLKYI 181
           +SS  N   + N+ +NY+   ++ IN++ I
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLYYNIINIEQI 344


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 657 CSVGLSLSLWLC 692
           CS+ L++ +W+C
Sbjct: 138 CSIWLAVDVWMC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,446
Number of Sequences: 438
Number of extensions: 5350
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)