Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20239
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49110.1 68418.m06079 expressed protein  ; expression support...    29   3.5  
At5g35604.1 68418.m04242 hypothetical protein                          28   6.2  
At1g47560.1 68414.m05279 expressed protein                             28   6.2  
At1g47550.1 68414.m05278 expressed protein                             28   6.2  

>At5g49110.1 68418.m06079 expressed protein  ; expression supported by
            MPSS
          Length = 1487

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 145  TIIFDCVLQILCDI 186
            TIIF+C +QILCDI
Sbjct: 1048 TIIFNCTVQILCDI 1061


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 523 WGTFINSWNTKLQSLNSDARSY 588
           W   INSW  K  SL +D RS+
Sbjct: 216 WEQEINSWRNKFSSLEADHRSF 237


>At1g47560.1 68414.m05279 expressed protein
          Length = 887

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 5   TRGIWSKSGILKRKI*KPHLSDLS 76
           +RG+W KSG L R++ KP +  LS
Sbjct: 35  SRGVWGKSGKLGRQMAKPRVLALS 58


>At1g47550.1 68414.m05278 expressed protein
          Length = 887

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 5   TRGIWSKSGILKRKI*KPHLSDLS 76
           +RG+W KSG L R++ KP +  LS
Sbjct: 35  SRGVWGKSGKLGRQMAKPRVLALS 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,564,849
Number of Sequences: 28952
Number of extensions: 369003
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)