Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20237
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    31   0.010
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.9  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   7.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.9  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 16  RLIVLFIAFDSNNTLISRFTVTSSVIKHRPRQPCRCE*YKCGD 144
           R I L   +D +   ++  TV S  +K R    C+C  YKCGD
Sbjct: 92  RTITLTHCYDPDGVRLTAETVNSMDVKLREPAECKC--YKCGD 132


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 426  SACIGLSSPNTLPGQPCPGCRVNTSHRRSRLVYGTNP 316
            S  + + +   +PG P    RV T+ + S +VY   P
Sbjct: 983  SETVTIITAEEVPGGPPTSIRVETNDQHSLVVYWKPP 1019


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 CLLDILDTAGQEEYSAMRDQYMRTGEGF 440
           C L +L    + EYSA  D Y    EGF
Sbjct: 844 CTL-LLQRGYRVEYSAASDAYTHAPEGF 870


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 CLLDILDTAGQEEYSAMRDQYMRTGEGF 440
           C L +L    + EYSA  D Y    EGF
Sbjct: 844 CTL-LLQRGYRVEYSAASDAYTHAPEGF 870


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 CLLDILDTAGQEEYSAMRDQYMRTGEGF 440
           C L +L    + EYSA  D Y    EGF
Sbjct: 844 CTL-LLQRGYRVEYSAASDAYTHAPEGF 870


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 CLLDILDTAGQEEYSAMRDQYMRTGEGF 440
           C L +L    + EYSA  D Y    EGF
Sbjct: 844 CTL-LLQRGYRVEYSAASDAYTHAPEGF 870


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 356 VFTRHPGHGWP 388
           V++RHP   WP
Sbjct: 156 VYSRHPYESWP 166


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 199 IYKIFFHTMSRH*KTTPQNHHTCITHI 119
           IY IFF    +H K        C+T++
Sbjct: 177 IYIIFFDMFYQHHKIVLDMGKNCVTYV 203


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 17/80 (21%), Positives = 29/80 (36%)
 Frame = +3

Query: 186 NILYISQDDRVQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 365
           N+  I+QD    +     G      + I  I + F   YD  +  +Y    V  G T  +
Sbjct: 14  NLASIAQDPSASVDAATGGGSVLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYV 73

Query: 366 DILDTAGQEEYSAMRDQYMR 425
             + +  + +     D Y R
Sbjct: 74  LSISSLSEVKMDFTLDFYFR 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,498
Number of Sequences: 336
Number of extensions: 4194
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)