Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20237
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 16  RLIVLFIAFDSNNTLISRFTVTSSVIKHRPRQPCRCE*YKCGD 144
           R I L   +D++   I      + V++ + R+P  C+  KCGD
Sbjct: 102 RHITLHHCYDADG--IKLMNEENGVMEIKIREPVECKCIKCGD 142


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 16  RLIVLFIAFDSNNTLISRFTVTSSVIKHRPRQPCRCE*YKCGD 144
           R I L   +D++   I      + V++ + R+P  C+  KCGD
Sbjct: 102 RHITLHHCYDADG--IKLMNEENGVMEIKIREPVECKCIKCGD 142


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 347 R*DVFTRHPGHGWPGRVFGDERPI 418
           R +V  R PG  WPG     +RPI
Sbjct: 908 RSNVTPRSPGRAWPGDSDIRQRPI 931


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 332 FTVRILYRGIVFVHEVILYQLYSQ 261
           +T   L  G V VH+ + YQLY +
Sbjct: 417 YTPSSLELGEVAVHDPVFYQLYKK 440


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 212 VILRDIQNIFSHNVTALENNAPESPHL 132
           +++RD     +  +   E   P SPHL
Sbjct: 94  ILIRDFSKFANRGLGVFERTEPLSPHL 120


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 417 YMRTGEGFLLVFAVNSAKSFEDIGS 491
           Y+   EGF L+   NS  SF+ + S
Sbjct: 202 YIGDNEGFALIIYNNSDNSFQRLTS 226


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 178 CEKIFCISRKMTEYK 222
           CEK+ CI RK T +K
Sbjct: 74  CEKVGCICRK-TSFK 87


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 253 YQRLPHPQPPICTRSSCEIYKIFF 182
           +Q L   +PP   +SSCEI   +F
Sbjct: 137 HQGLVEWKPPAIYKSSCEIDVEYF 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 472 LLALLTANTSKNPSPVRMYWSLIAEYS 392
           ++ +L +  S NP   R+Y  L++ Y+
Sbjct: 11  IVLVLISGCSGNPDAKRLYDDLLSNYN 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,413
Number of Sequences: 438
Number of extensions: 5757
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)