Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20236
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   1.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.6  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 516 YPRTSSNW*NRQLSKDNSASNGSGD 442
           Y  +S N+  R  +  NSASN SGD
Sbjct: 334 YTASSKNY--RSATGGNSASNSSGD 356


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 486 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 382
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 146 GRDXYRVHEDRRGXYLH 96
           G+D + VH  RRG  LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 499 RRGSGVTRSESHTPS 543
           RRG G  RS  H P+
Sbjct: 329 RRGPGPARSRRHLPA 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,166
Number of Sequences: 336
Number of extensions: 2590
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)