Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20236
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   150   2e-37
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   3.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   3.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   4.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   8.0  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   8.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  150 bits (363), Expect = 2e-37
 Identities = 70/106 (66%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
           K +   E  L SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGS-GVTRSESHT 537
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRG  G    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = +2

Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLY 58



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +3

Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
           +WG  +G PHTVP KV+GKCGSVT
Sbjct: 142 YWGTALGDPHTVPVKVSGKCGSVT 165


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 522 SCYPRTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 355
           SCY   S +   R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 365 SCYMPESLS---RNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 202 RPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDE 318
           R    +++NR+T +  LV   +      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 560 AGDLAR-DGVWL--SDLVTPEPLRTGKTDNLARIIAPRMAVATS 438
           AGD+   DGV +  ++LV  E   TG+TDN+ ++ A      TS
Sbjct: 342 AGDVVPVDGVLIESNNLVLDESAMTGETDNIKKVDANTAIERTS 385


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = -1

Query: 290  KSMISNSLIGKETSKCSRVCRFFLREQDGRVW*QEPTLSGLPCRAXDHGR-DXYRVHED 117
            K +I  S +G   +  S    FF    +  +     T   L CR   HG    YR H++
Sbjct: 865  KKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNMDLECRTCSHGNFRVYRFHDE 923


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 272 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 382
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,125
Number of Sequences: 5004
Number of extensions: 44050
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)