Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20236
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 141 4e-34
07_01_0756 + 5819367-5820038,5820847-5821005 137 7e-33
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 6e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.7
05_06_0155 - 26028923-26030263 29 2.7
04_03_0141 + 11767781-11767880,11767953-11769262 28 4.7
08_01_0312 + 2764744-2767390,2767632-2767990 27 8.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 141 bits (341), Expect = 4e-34
Identities = 68/89 (76%), Positives = 78/89 (87%)
Frame = +1
Query: 241 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 420
E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GL
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122
Query: 421 GVKCSKEVATAIRGAIILAKLSVLPVRRG 507
GVKC+KEVATAIRGAIILAKLSV+PVRRG
Sbjct: 123 GVKCAKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIG+PHTVPCKVTGKCGSVT
Sbjct: 152 YWGNKIGQPHTVPCKVTGKCGSVT 175
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/30 (60%), Positives = 27/30 (90%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 253
++++++WVPVTKLGRLV+EG+ K+E IYL
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYL 67
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 137 bits (331), Expect = 7e-33
Identities = 67/95 (70%), Positives = 79/95 (83%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRG
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRG 154
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 155 YWGNKIGKPHTVPCKVTGKCGSVT 178
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 253
++++++WVPVTKLGRLV+E KI K+E IYL
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYL 70
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 489
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 490 LPV 498
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 382 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 477
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 528 KPHTVPCKVTGKCGSVT 578
KPHTV CKV K GSVT
Sbjct: 47 KPHTVSCKVADKYGSVT 63
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 444 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 328
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>05_06_0155 - 26028923-26030263
Length = 446
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 187 SCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLN 312
SCH P R N RE+L S+P + D F +L+
Sbjct: 52 SCHSNVPELIRAMNAPLREYLRSSVPSARAVVFDMFCACALD 93
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 194 TKLGRLVREGKIDKLESIYLFLYQSKNSRSLISSSARP 307
T++G L + ++ LES F+Y + S SSSARP
Sbjct: 428 TRVGTL--DSRVQMLESSQAFVYHGRRDASHPSSSARP 463
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 362 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 487
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,602
Number of Sequences: 37544
Number of extensions: 327467
Number of successful extensions: 944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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