Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20236
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              167   8e-42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.51 
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   2.1  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   2.7  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   2.7  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   2.7  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   2.7  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   4.8  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   4.8  
SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     28   6.3  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  167 bits (405), Expect = 8e-42
 Identities = 82/93 (88%), Positives = 88/93 (94%), Gaps = 1/93 (1%)
 Frame = +1

Query: 232 QTREHL-LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 408
           +T EH+ L SLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 409 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 116



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 507 FWGNKIGKPHTVPCKVTGKCGS 572
           +WGNKIGKPHTVPCKVTGKCGS
Sbjct: 117 YWGNKIGKPHTVPCKVTGKCGS 138



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +2

Query: 182 WVPVTKLGRLVREGKIDKLESIYLF 256
           WVPVTKLGRLV++ KI  LE IYLF
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLF 32


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 483 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 304
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 303 RAEEEI 286
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 483 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 304
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 303 RAEEEI 286
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 387 CHWRQQRSYWFGCEVQQGSRHCHSRRYYP-C*VVCFTSSKRFWGNK 521
           C  R   +  + C +  G + CH   Y P C V C ++S  F  NK
Sbjct: 677 CEARNDSTGHYSCNLTNGQKVCHRDWYGPFCDVNCNSNSSHFTCNK 722



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +3

Query: 330 HACTETNTCRTAHT-FQGICCHWR-QQRSYWFGCEVQQGSRHCHSRRYYP-C*VVC-FTS 497
           ++C  TN  +  H  + G  C       S  F C    G+R CHS  Y   C V C   S
Sbjct: 687 YSCNLTNGQKVCHRDWYGPFCDVNCNSNSSHFTCNKTTGARVCHSNWYGTYCDVYCNSNS 746

Query: 498 SKRFWGNK 521
           S  F  NK
Sbjct: 747 SSHFACNK 754


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3

Query: 456 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 325
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 360 TAHTFQGICCHWRQQRSYW 416
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 358 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 447
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 299 PRKKSMISNSLIGKETSKCSRVCRFFLREQDGRVW*QEPTLSGLPC 162
           PR  +++ N+L+G    +C +V  + + +++  V    P +   PC
Sbjct: 299 PRPSTVLHNTLVGVGIGECRKVFCYDVEDKETYVLPDLPQVQAFPC 344


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 340 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGSGVT 519
           +KQT   Q+ R KA   +G +    G+GV+ +K     +     + +L V  ++  S V 
Sbjct: 56  EKQTEKIQQERHKALEDMGISIQSSGIGVEKNKFYLVNLNADPAMNELLVYYLKEHSKVG 115

Query: 520 RSE-SHTPSL 546
           R + +HTP +
Sbjct: 116 RLDANHTPDI 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,109,337
Number of Sequences: 59808
Number of extensions: 384941
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)