Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20236
(578 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 168 4e-42
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 168 4e-42
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 168 4e-42
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 168 4e-42
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 168 4e-42
AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA... 31 1.5
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 168 bits (409), Expect = 4e-42
Identities = 84/95 (88%), Positives = 86/95 (90%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
KED KEWVPVTKLGRLVREGKI LE IYL+
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 152 YWGNKIGKPHTVPCKVTGKCGSVS 175
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 168 bits (409), Expect = 4e-42
Identities = 84/95 (88%), Positives = 86/95 (90%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
KED KEWVPVTKLGRLVREGKI LE IYL+
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 152 YWGNKIGKPHTVPCKVTGKCGSVS 175
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 168 bits (409), Expect = 4e-42
Identities = 84/95 (88%), Positives = 86/95 (90%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
KED KEWVPVTKLGRLVREGKI LE IYL+
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 152 YWGNKIGKPHTVPCKVTGKCGSVS 175
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 168 bits (409), Expect = 4e-42
Identities = 84/95 (88%), Positives = 86/95 (90%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
KED KEWVPVTKLGRLVREGKI LE IYL+
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 152 YWGNKIGKPHTVPCKVTGKCGSVS 175
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 168 bits (409), Expect = 4e-42
Identities = 84/95 (88%), Positives = 86/95 (90%)
Frame = +1
Query: 223 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 402
K + E L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 403 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 151
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 164 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 256
KED KEWVPVTKLGRLVREGKI LE IYL+
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSV+
Sbjct: 152 YWGNKIGKPHTVPCKVTGKCGSVS 175
>AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA
protein.
Length = 1052
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 157 ARQGRPERVGSCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDF 291
AR RP+R G + +R +N + H L +P++ FE DF
Sbjct: 180 ARSSRPQRQGRGLRRLFESNRSQNPPSEHHYLHGVPVRRFERQDF 224
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,825,172
Number of Sequences: 53049
Number of extensions: 543954
Number of successful extensions: 1518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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