Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20236
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 138 3e-33
Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 4.2
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 4.2
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 28 5.5
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 27 7.3
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 7.3
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 138 bits (333), Expect = 3e-33
Identities = 72/96 (75%), Positives = 79/96 (82%)
Frame = +1
Query: 220 RKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 399
+K E L SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70 KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128
Query: 400 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRG
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRG 164
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSV 575
+WGNKIG PHTVPCKVTGKC SV
Sbjct: 165 YWGNKIGLPHTVPCKVTGKCASV 187
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +2
Query: 167 EDQKEWVPVTKLGRLVREGKIDKLESIYL 253
E + EW PVTKLGRLV+E KI LE IYL
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYL 80
>Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical
protein M05D6.7 protein.
Length = 409
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 197 KLGRLVREGKIDKLESIYLFLYQSKNSRSL 286
K+G ++REGK++K S +Y+ NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 507 TSSNW*NRQLSKDNSASNGSG 445
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 321 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 464
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 321 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 464
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -2
Query: 559 PVTLQGTVCGFPILLPQNLFELVKQTT*QG**RLEWQWRLPCCTSHPNQYDRC-CRQWQQ 383
PV Q + C + Q + V+Q Q + Q + P C P Q D C C+ QQ
Sbjct: 32 PVQQQPSCCQQSTINVQVQYTQVQQAPAQDPCACQPQQQQPACNCAPVQQDPCACQPQQQ 91
Query: 382 MP*NVCA 362
P CA
Sbjct: 92 QPACNCA 98
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 493 PVRRGSGVTRSESHTPSLARS 555
PVRRG +RS S +PS +RS
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRS 184
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 493 PVRRGSGVTRSESHTPSLARS 555
PVRRG +RS S +PS +RS
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRS 184
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 265 LVKKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 167
L + ALEF++ F A FGDRN P VF
Sbjct: 245 LASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 169 RPERVGSCHQTRPSCSRRKNRQTREHLLVSLPI-KEFEIIDFFLGPSLNDEVLKIMP 336
RP R G T+PS SRR + T VS+P +F I LG +L + ++P
Sbjct: 2145 RPHRAGKGTITKPSGSRRGAQMTVAR-TVSIPFSSDFSGIRMRLGTTLASTSVGVIP 2200
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 190 CHQTRPSCSRRKNRQTREHLLVSL 261
C Q +P+C+ N Q E +LVS+
Sbjct: 180 CPQNQPACTCSTNNQQNEQILVSI 203
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 387 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 301
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 387 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 301
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,229
Number of Sequences: 27780
Number of extensions: 267614
Number of successful extensions: 795
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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