Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20236
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 155 2e-38
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 154 4e-38
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 153 8e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 153 8e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 153 8e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 153 8e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 29 3.0
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 3.0
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.0
At3g01450.1 68416.m00069 expressed protein 29 3.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.9
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 6.8
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 27 9.0
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 27 9.0
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 155 bits (377), Expect = 2e-38
Identities = 72/93 (77%), Positives = 83/93 (89%)
Frame = +1
Query: 229 RQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 408
+Q + L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 409 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 507
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 162
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 163 YWGNKIGKPHTVPCKVTGKCGSVT 186
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++++WVPVTKLGRLV G I ++E IYL
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYL 77
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 154 bits (374), Expect = 4e-38
Identities = 70/86 (81%), Positives = 81/86 (94%)
Frame = +1
Query: 250 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 429
L SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVK
Sbjct: 68 LHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVK 127
Query: 430 CSKEVATAIRGAIILAKLSVLPVRRG 507
CSKEVATAIRGAIILAKLSV+P+RRG
Sbjct: 128 CSKEVATAIRGAIILAKLSVVPIRRG 153
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 154 YWGNKIGKPHTVPCKVTGKCGSVT 177
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++++WVPVTKLGRLV+EGKI K+E IYL
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYL 68
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 153 bits (371), Expect = 8e-38
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 429
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 430 CSKEVATAIRGAIILAKLSVLPVRRG 507
CSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRG 161
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 162 YWGNKIGKPHTVPCKVTGKCGSVT 185
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 153 bits (371), Expect = 8e-38
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 429
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 430 CSKEVATAIRGAIILAKLSVLPVRRG 507
CSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRG 161
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 162 YWGNKIGKPHTVPCKVTGKCGSVT 185
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 153 bits (371), Expect = 8e-38
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 429
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 430 CSKEVATAIRGAIILAKLSVLPVRRG 507
CSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRG 161
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 162 YWGNKIGKPHTVPCKVTGKCGSVT 185
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 153 bits (371), Expect = 8e-38
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 429
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 430 CSKEVATAIRGAIILAKLSVLPVRRG 507
CSKEVATAIRGAIILAKLSV+PVRRG
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRG 161
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3
Query: 507 FWGNKIGKPHTVPCKVTGKCGSVT 578
+WGNKIGKPHTVPCKVTGKCGSVT
Sbjct: 162 YWGNKIGKPHTVPCKVTGKCGSVT 185
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 170 DQKEWVPVTKLGRLVREGKIDKLESIYL 253
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 313 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 492
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 493 PV 498
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 359 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLIGKETSK 246
P R FC+G+ +S + PR+KS +S+ L K+ K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 562 LPVTLQGTVCGFPILLPQNLF 500
LP+ LQG + GF + LP N++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 530 LSDLVTPEPLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 351
L L+T L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 350 VCFCTGMIFRTSSFR 306
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -1
Query: 524 DLVTPEPLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVC 345
DL+ + L D A A+ H +P + P L P N R+R A C
Sbjct: 164 DLLLTQLLLKSSQDKRFVCEAAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTC 223
Query: 344 F 342
F
Sbjct: 224 F 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 379 AFVAIGDNNGHIGLGVKCSKE 441
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 12 LSEPIVQQWRTLLQP 56
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 308 RDGPRKKSMISNSLIGKETSKCSRVCRFFLREQDGR 201
R+ P ++++ +L+ T KC C RE+ GR
Sbjct: 288 RNCPHLETLVLEALLHHVTDKCGDACACVSREEKGR 323
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +3
Query: 405 RSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRFWGNKIGKPHTVPCKVTGKCGSVT 578
+S ++ CE+ + H + +Y P V+ + + N KP+ + C KCG ++
Sbjct: 89 KSLFYNCEICNFNVHMYCAKYPPPQVIDISETHHHKLNLYKKPNYIDC--GDKCGKLS 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,044
Number of Sequences: 28952
Number of extensions: 251787
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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