Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20234
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-30
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 95 4e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 87 1e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 80 1e-15
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 42 4e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.29
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.29
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.89
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 30 1.2
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1) 30 1.2
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2) 30 1.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.6
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3) 29 3.6
SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1) 29 3.6
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 28 4.8
SB_30424| Best HMM Match : Chorion_3 (HMM E-Value=5.6) 28 4.8
SB_17904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_53952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 28 6.3
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_33635| Best HMM Match : Ponericin (HMM E-Value=2.9) 28 6.3
SB_27937| Best HMM Match : POPLD (HMM E-Value=0.38) 28 6.3
SB_15449| Best HMM Match : Transposase_11 (HMM E-Value=9.6) 28 6.3
SB_50235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_41555| Best HMM Match : CXC (HMM E-Value=3.9) 27 8.3
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_8725| Best HMM Match : Crl (HMM E-Value=2.1) 27 8.3
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_33912| Best HMM Match : Transposase_27 (HMM E-Value=3.6) 27 8.3
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +2
Query: 257 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 436
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQK 257
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSE 48
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = +2
Query: 218 QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 397
+ Y RE +E E ++ +W LD + ER++G T+++ F+T + T++DAPGH
Sbjct: 177 EKYEREAKEKNRE----TWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232
Query: 398 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHA+LA T GVK L++ VNK
Sbjct: 270 TREHAMLAKTAGVKHLVILVNK 291
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 198 YKCGGIDKRTIEKFEKEAQK 257
Y G +DKRT+EK+E+EA++
Sbjct: 166 YLTGQVDKRTLEKYEREAKE 185
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +2
Query: 329 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHA+L +LGV QLIV +NK
Sbjct: 61 TREHAILVRSLGVTQLIVAINK 82
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 472
D ++ ER+RGI++ ++ F + I+D PGH+DF ++ + D ++++
Sbjct: 55 DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114
Query: 473 G 475
G
Sbjct: 115 G 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 GGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMI 421
G + GK + A + A GIT I + + S +T ID PGH F
Sbjct: 35 GHVDHGKTTLLDALRNSSVAAGEAGGITQHIGAFLVKLPSGEKITFIDTPGHAAFNSMRA 94
Query: 422 TGTSQADCAVLIVAAGTG 475
G + D VL+VAA G
Sbjct: 95 RGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 320 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 209
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 365 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 475
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 296 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 463
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = +2
Query: 293 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 433
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
A +I GT E G ++G+
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGK 141
>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
Length = 751
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + G I K T+ K KE+++W+ +PS GYW
Sbjct: 269 HVAEDKSFTT-----RVGDIFKETVVTHKSAKESRRWLSEPS--YGYW 309
>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
Length = 754
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + G I K T+ K KE+++W+ +PS GYW
Sbjct: 295 HVAEDKSFTT-----RVGDIFKETVVTHKSAKESRRWLSEPS--YGYW 335
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 377 IIDAPGHRDFIKNMITGTSQADCAVLIV 460
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 129 THINIVVIGHVDSGKSTTTGHLIY 200
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 287 VLDKLKAERERGITI 331
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 236
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 174 STTTGHLIYKCGGIDK----RTIEKFEKEAQKWVKDPSNML 284
+T G LIY GG D ++E ++ +A+ W K+ NML
Sbjct: 292 ATVHGGLIYVLGGRDNDADLSSVEVYDPKAKTWSKEELNML 332
>SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3)
Length = 306
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ DPS GYW
Sbjct: 118 HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSDPS--YGYW 158
>SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1)
Length = 398
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV +S TT + I K T+ K KE+++W+ +PSN GYW
Sbjct: 88 HVAEDRSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPSN--GYW 128
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT K I K T+ K KE+++W+ +PS GYW
Sbjct: 1165 HVAEDKSFTT-----KVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 1205
>SB_30424| Best HMM Match : Chorion_3 (HMM E-Value=5.6)
Length = 377
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 28 HVAEDKSFTT-----RVRDISKETVVTHKSAKESRRWLSEPS--YGYW 68
>SB_17904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K +KE+++W+ +PS GYW
Sbjct: 87 HVAEDKSFTT-----RVRDIFKETVVTHKSDKESRRWLSEPS--YGYW 127
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TTG + K T+ K KE+++W+ +PS GYW
Sbjct: 56 HVAEDKSFTTG-----VRDVFKETVVTHKSAKESRRWLSEPS--YGYW 96
>SB_53952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS+TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 168 HVAEDKSSTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 208
>SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 360 LVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISGPPSRTSRWY 223
++ N+ RAI + L T Y +DPL P RT R+Y
Sbjct: 28 MIDNYSRAIDLFRRFDVDETPLLGTPPYYRDPLIRDTPLLRTPRYY 73
>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 213 IDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
I K T+ KF KE+++W+ +PS GYW
Sbjct: 18 IFKETVVTHKFAKESRRWLSEPS--YGYW 44
>SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 156 HVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAQKWVKDPSNMLGYW 293
HV KS TT I+K + T K KE+++W+ +PS GYW
Sbjct: 87 HVAEDKSFTTSVRDIFK----ETVTTHKSAKESRRWLSEPS--YGYW 127
>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS+ GYW
Sbjct: 493 HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPSH--GYW 533
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 132 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQKWVKDPSNML 284
H+ VIGH+ ST GHLI C + + + + F+++ K +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 558 DELFDTEGESEQGMLTG*PFLEIPASNSPVPAATMSTAQSA*EVPVIMFLM 406
D + DT + +G TG IPA SPVP A +A + P+ + LM
Sbjct: 832 DMMADTPDTTPKGTATG-----IPAPVSPVPNAPADSATDSDSDPIAILLM 877
>SB_33635| Best HMM Match : Ponericin (HMM E-Value=2.9)
Length = 224
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 129 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
TH+ I HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 30 THLEI----HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 75
>SB_27937| Best HMM Match : POPLD (HMM E-Value=0.38)
Length = 285
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 4 HVAEDKSVTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 44
>SB_15449| Best HMM Match : Transposase_11 (HMM E-Value=9.6)
Length = 363
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PSN G+W
Sbjct: 135 HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPSN--GHW 175
>SB_50235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 88 HVAGNKSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 128
>SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)
Length = 607
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 189 HVAEDKSLTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 229
>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1881
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K TI K KE+++W+ +PS GYW
Sbjct: 146 HVAEDKSFTT-----RVRDIFKETIVTHKSAKESRRWLSEPS--YGYW 186
>SB_8725| Best HMM Match : Crl (HMM E-Value=2.1)
Length = 221
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 172 HVAEDKSFTT-----RVRNIFKETVVTHKSAKESRRWLSEPS--YGYW 212
>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1665
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 542 PRVKASKACSRVDRS*RYQLRIHRYRQL 459
PRV+A K S ++ + Q+RIH RQL
Sbjct: 192 PRVRAEKKMSVREQDYQIQIRIHEARQL 219
>SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 27 HVAENKSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPS--YGYW 67
>SB_33912| Best HMM Match : Transposase_27 (HMM E-Value=3.6)
Length = 760
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQKWVKDPSNMLGYW 293
HV KS TT + I K T+ K KE+++W+ +PS GYW
Sbjct: 169 HVAEDKSFTT-----RARDIFKETVVTHKSAKESRRWLSEPS--YGYW 209
>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 189 HLIYKCGGIDKRTIEKFEKEAQKWVKDPSNMLGYWT 296
H +++ D + + KEA +W+ P+ LGYW+
Sbjct: 453 HFVFRDIFTDSELVFRTAKEASRWLDAPN--LGYWS 486
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,691,270
Number of Sequences: 59808
Number of extensions: 320004
Number of successful extensions: 1004
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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